Entry information : SpolPrx21 (Spipo4G0113000)
Entry ID 13222
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-09 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-02-25 (Catherine Mathe)
Peroxidase information: SpolPrx21 (Spipo4G0113000)
Name (synonym) SpolPrx21 (Spipo4G0113000)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx21
start..stop
S start..stop
GmPrx314 456 4e-162 1..326 7..335
LjPrx02 451 3e-160 1..336 1..340
AfpPrx19 448 3e-159 28..344 31..348
AcoPrx11 447 6e-159 23..344 26..348
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 8290388..8290624 237 N° 2 8290117..8290302 186 N° 3 8289403..8290023 621  
complement(join(8289403..8290023,8290117..8290302,8290388..8290624))


exon

Literature and cross-references SpolPrx21 (Spipo4G0113000)
DNA ref. Phytozome 12:   pseudo4 (8290624..8289403)
Cluster/Prediction ref. Phytozome Gene 12:   31504236
Protein sequence: SpolPrx21 (Spipo4G0113000)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   348 (323)
PWM (Da):   %s   37757.19 (35290.9) Transmb domain:   %s   i7-29o
PI (pH):   %s   7.34 (7.36) Peptide Signal:   %s   cut: 25 range:25-347
Sequence
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Send to Peroxiscan
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MASASTFLLLALAAFPVLCTGVAAFEYPPLVKGLSWTFYKSSCPKAESIVRNYLKKAIKRDVGLAAGLLRIHFHDCFVQGCEGSVLLDGADGEKFAPPNLSLRQSGFDAINEIRNLLQKECGRVVSCADIAALAARDSVFLTGGPDYKVPTGRRDGLTFASRATTLDFLPPPTANATVLIEALDKLKLDTTDLVTLSGGHTIGIGHCPSFTGRLYPNQDPVMDKTFANNLKRTCPQTNTDNETVLDIRSPNVFDNKYYVNLMNRQGLFTSDQTLHTDRKTKDIVISFALDQNLFFEKFAYSMTKMGMLNVLTGSQGQIRANCSVRNPSRADEALSTLVDGDGEAVAF*

Retrieve as FASTA  
Remarks
Promoter
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Send to cis Analysis
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CCCATCATGT CCTGGACGGC CCGGCTGTAC GCCAGAGCTC TCCATGACGT CGTTGACTTC TCCCTGCGCG AAAATGGTCA GCCACATTAA CACAGAAGAG AGAGAGAGAG AGAGAGAGAG  AGAGAGAGAG AGAGAGAGAG AGAGAGGGAG GTGGGTTCAG TGACACCGAC TGAGGTGGCA TTTATCTTGT AGATTATGTG TTTGGCGACC GGAAGTTCGG GGGGAACGCC CAGTCGATAA  CGAGGGCGCG GTGGCTCCAC CACACGTCGT TTCTGTGGGA CTACGACGCC GGGAATATGC GGTACCTGAA GCATCCTCCC CGGGCCCCCA AGTATCGCTC GGTATGGTCT CTCCCTCCCC  CCTCCGAGTT CTGGGATTGA CTTTGCTCAA CGTGTTGACT TCACGTTGTC CTGTTCTTCC TTGTGTGCGG ATCAGGCAAG GCGGCACGAG GAGTTCTTGT GCCCCATGAA GGGGTTCCTC  TCCTCGAGCT GGGATTTCAT CGACCGGACC GTCGCCTCCA TCGAAGAGCA CTTCTCACTC CGGCGGGTCG AGCTCGGCGC CGTCACCGAC TCTCCAGCGG CGGCGGCGGC GGCGGAGTAT  CCTCATTCGA CCAGGCTCCT GACGGAAGAG GAGCTTGAGG CGGCAATAGC GTCAGCGGCA GAGGTGATTC ATCCCCAAGA TTAGCTGTTT TTTTCCCATA TTAATTCCCC AATTCAAACA  GAAAAAATGA ACCCACGATT CGGTTCCTTC TTGATCGGAG AGATCGTTGC TTCTCTGGAA GCAAGAACAC AGCCATGTTT CTCAGGTATA GAAGATGTGA CGGCTGTGGG CTTCTCCGGG  TTGTCCCATC CATGATTGGG CCCGGCCTGG TTTGACCGTA GTGGATGCGG CGGCTCGCTG TCCCTCCAAT CAGCGCTGAT CGGCACCCCG CTAGAGAGAG AGAGAGAGAG AGAGAGAGAG  AGAGAGGAGn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnCCTCCAC TCGACGTGGT CGTCTCTCTC TCTCTCTCTC TCTCTCTCTA ATGGCGTCTG CAAGCACCTT CCTGCTGCTA GCGCTCGCCG  CCTTCCCAGT CCTCTGCACG GGGGTGGCGG CGTTCGAGTA CCCTCCGCTG GTGAAGGGGC TGTCGTGGAC CTTCTACAAG AGCAGCTGCC CCAAGGCGGA GTCCATCGTG AGGAACTACC  TGAAGAAGGC CATCAAGAGG GACGTCGGCT TGGCCGCCGG GCTCCTCCGC ATCCACTTCC ACGACTGCTT CGTCCAGGTG ATTATCGATC GCCTTCTCCG ACCAGTGGCG GCGCCGCCGG  CGACTGTAGC TTGACGGTGC AGTCTTCGTC TTCCTTGTGT AGGGCTGCGA GGGGTCGGTC TTGCTCGACG GCGCCGATGG CGAGAAGTTC GCGCCACCGA ACCTGTCCCT CCGGCAGTCC  GGCTTCGACG CCATCAACGA GATCCGCAAC CTCCTCCAGA AGGAGTGCGG CCGCGTCGTC TCCTGCGCCG ACATCGCTGC CCTCGCCGCA CGCGACTCCG TCTTCCTGGT AAAAAAAAAA  AAAAAGAGAG AGATAAACCC TGACAAGATT TCCCCCCATG CTCGTCCTCC ACATTGACTT CGTGACGGCG ACTTGGCGCA GACCGGGGGG CCCGACTACA AGGTGCCGAC GGGGCGGCGA  GATGGTCTGA CCTTCGCGAG CAGAGCGACC ACACTGGACT TCCTGCCGCC GCCGACGGCC AACGCGACAG TACTCATCGA AGCCCTGGAC AAGCTCAAAC TGGACACCAC CGACCTGGTG  ACGCTCTCCG GGGGGCACAC CATCGGCATC GGTCACTGCC CCTCCTTTAC CGGCCGGCTG TACCCGAACC AGGACCCCGT CATGGACAAG ACCTTCGCCA ACAACCTCAA GCGCACCTGC  CCGCAGACCA ACACCGACAA CGAGACCGTG CTGGACATCC GCAGCCCCAA CGTCTTCGAC AACAAGTACT ACGTTAACCT GATGAACCGG CAGGGGCTCT TCACCTCCGA CCAGACTCTC  CACACCGACA GGAAGACGAA GGACATCGTC ATCAGCTTCG CCCTTGACCA GAACCTCTTC TTCGAGAAGT TCGCCTACTC CATGACGAAA ATGGGGATGC TGAATGTCCT CACCGGCAGC 
CAGGGGCAGA TCCGCGCCAA CTGCTCCGTC CGCAACCCGT CCCGCGCCGA CGAGGCCCTG TCGACCCTCG TCGACGGCGA CGGCGAGGCC GTCGCCTTCT AG 

Retrieve as FASTA  
DNA
Send to BLAST
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ATGGCGTCTGCAAGCACCTTCCTGCTGCTAGCGCTCGCCGCCTTCCCAGTCCTCTGCACGGGGGTGGCGGCGTTCGAGTACCCTCCGCTGGTGAAGGGGCTGTCGTGGACCTTCTACAAG
AGCAGCTGCCCCAAGGCGGAGTCCATCGTGAGGAACTACCTGAAGAAGGCCATCAAGAGGGACGTCGGCTTGGCCGCCGGGCTCCTCCGCATCCACTTCCACGACTGCTTCGTCCAG
GTG
ATTATCGATCGCCTTCTCCGACCAGTGGCGGCGCCGCCGGCGACTGTAGCTTGACGGTGCAGTCTTCGTCTTCCTTGTGTAGGGCTGCGAGGGGTCGGTCTTGCTCGACGGCGCCGATGG
CGAGAAGTTCGCGCCACCGAACCTGTCCCTCCGGCAGTCCGGCTTCGACGCCATCAACGAGATCCGCAACCTCCTCCAGAAGGAGTGCGGCCGCGTCGTCTCCTGCGCCGACATCGCTGC
CCTCGCCGCACGCGACTCCGTCTTCCTG
GTAAAAAAAAAAAAAAAGAGAGAGATAAACCCTGACAAGATTTCCCCCCATGCTCGTCCTCCACATTGACTTCGTGACGGCGACTTGGCGCA
GACCGGGGGGCCCGACTACAAGGTGCCGACGGGGCGGCGAGATGGTCTGACCTTCGCGAGCAGAGCGACCACACTGGACTTCCTGCCGCCGCCGACGGCCAACGCGACAGTACTCATCGA
AGCCCTGGACAAGCTCAAACTGGACACCACCGACCTGGTGACGCTCTCCGGGGGGCACACCATCGGCATCGGTCACTGCCCCTCCTTTACCGGCCGGCTGTACCCGAACCAGGACCCCGT
CATGGACAAGACCTTCGCCAACAACCTCAAGCGCACCTGCCCGCAGACCAACACCGACAACGAGACCGTGCTGGACATCCGCAGCCCCAACGTCTTCGACAACAAGTACTACGTTAACCT
GATGAACCGGCAGGGGCTCTTCACCTCCGACCAGACTCTCCACACCGACAGGAAGACGAAGGACATCGTCATCAGCTTCGCCCTTGACCAGAACCTCTTCTTCGAGAAGTTCGCCTACTC
CATGACGAAAATGGGGATGCTGAATGTCCTCACCGGCAGCCAGGGGCAGATCCGCGCCAACTGCTCCGTCCGCAACCCGTCCCGCGCCGACGAGGCCCTGTCGACCCTCGTCGACGGCGA
CGGCGAGGCCGTCGCCTTCTAG

Retrieve as FASTA  
CDS
Send to BLAST
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ATGGCGTCTGCAAGCACCTTCCTGCTGCTAGCGCTCGCCGCCTTCCCAGTCCTCTGCACGGGGGTGGCGGCGTTCGAGTACCCTCCGCTGGTGAAGGGGCTGTCGTGGACCTTCTACAAG
AGCAGCTGCCCCAAGGCGGAGTCCATCGTGAGGAACTACCTGAAGAAGGCCATCAAGAGGGACGTCGGCTTGGCCGCCGGGCTCCTCCGCATCCACTTCCACGACTGCTTCGTCCAG
GGC
TGCGAGGGGTCGGTCTTGCTCGACGGCGCCGATGGCGAGAAGTTCGCGCCACCGAACCTGTCCCTCCGGCAGTCCGGCTTCGACGCCATCAACGAGATCCGCAACCTCCTCCAGAAGGAG
TGCGGCCGCGTCGTCTCCTGCGCCGACATCGCTGCCCTCGCCGCACGCGACTCCGTCTTCCTG
ACCGGGGGGCCCGACTACAAGGTGCCGACGGGGCGGCGAGATGGTCTGACCTTCGCG
AGCAGAGCGACCACACTGGACTTCCTGCCGCCGCCGACGGCCAACGCGACAGTACTCATCGAAGCCCTGGACAAGCTCAAACTGGACACCACCGACCTGGTGACGCTCTCCGGGGGGCAC
ACCATCGGCATCGGTCACTGCCCCTCCTTTACCGGCCGGCTGTACCCGAACCAGGACCCCGTCATGGACAAGACCTTCGCCAACAACCTCAAGCGCACCTGCCCGCAGACCAACACCGAC
AACGAGACCGTGCTGGACATCCGCAGCCCCAACGTCTTCGACAACAAGTACTACGTTAACCTGATGAACCGGCAGGGGCTCTTCACCTCCGACCAGACTCTCCACACCGACAGGAAGACG
AAGGACATCGTCATCAGCTTCGCCCTTGACCAGAACCTCTTCTTCGAGAAGTTCGCCTACTCCATGACGAAAATGGGGATGCTGAATGTCCTCACCGGCAGCCAGGGGCAGATCCGCGCC
AACTGCTCCGTCCGCAACCCGTCCCGCGCCGACGAGGCCCTGTCGACCCTCGTCGACGGCGACGGCGAGGCCGTCGCCTTCTAG

Retrieve as FASTA