Entry information : SpolPrx22 (Spipo0G0172800)
Entry ID 13223
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-17 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-02-25 (Catherine Mathe)
Peroxidase information: SpolPrx22 (Spipo0G0172800)
Name (synonym) SpolPrx22 (Spipo0G0172800)
Class Class III peroxidase    [Orthogroup: Prx005]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx22
start..stop
S start..stop
MePrx53 455 2e-162 8..325 10..327
RcPrx16 447 2e-159 16..325 19..328
PpePrx07 446 8e-159 11..325 11..326
GhPrx22 442 1e-157 24..325 25..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 10968468..10968689 222 N° 2 10968175..10968366 192 N° 3 10967740..10967905 166 N° 4 10967254..10967648 395
complement(join(10967254..10967648,10967740..10967905,10968175..10968366,1096846 8..10968689))


exon

Literature and cross-references SpolPrx22 (Spipo0G0172800)
DNA ref. Phytozome 12:   pseudo0 (10968689..10967290)
Cluster/Prediction ref. Phytozome Gene 12:   31507867
Protein sequence: SpolPrx22 (Spipo0G0172800)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (298)
PWM (Da):   %s   33955.44 (31209.0)  
PI (pH):   %s   4.45 (4.30) Peptide Signal:   %s   cut: 28 range:28-325
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASPPRPSSLLQTAALFLALLLHGCSAQLSTSFYDSSCANLTSVVTNVIRQAQNSDPRIHASLVRLHFHDCFVDGCDASILLDSIGSIQTEKDAAPNRNSVRGFDVVDDIKTAVENVCPGIVSCADILALAAQISVAEAGGPSYTVPLGRRDGTTANPSGANSALPSPFEGLSAIQSKFSAVGLDDTDLVALSGAHTFGRAQCFTFSGRLYNFSGTGSPDPTLDTSYGDTLRQSCPESGGGSTLNDLDPTTRDAFDNNYFTNLQSNRGLLQSDQELFSTSGASTVSIVNNFANSQSTFFQSFGNSMINMGNISPLTGSNGQIRS

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). Incorrect prediction from Phytozome (PS is missing).
Promoter
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Send to cis Analysis
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CGTGTCAGGG AACGGAAGAT CTTGCCCTTG ACTGAGCGGG AGTTGCCGCC GAGGCCGAGG AAGGAGTGGC TCCGGTGGTA GCAGATCTCT GCCTCGAGCC CCGATTTCCT GCACCGGATG  CGGACGACGC CCGACCACTC GGTGCCCGGC ACCGGGAGGA GCTTGATGAC CAGCGCCGGC GCGTCGAGCT CGTAGCTCTC GCCGTGGCTC AGCAGGTTCA GCCGCCTCTC CCCCTTGATG  ACCACCTCCA CGCTGGTGCC TGGCAGTGGC GAGCTCCCTG TGTCACTTTT TCCGGCCCTC GCTGGTGGAA GAAGGACGGA GATGGACGGA GAAGGAAGGG GGGAAGGATG AGCTTGCCGT  TGAATCTCGG GACGGGGTTC TGCCACCAGA CGAGCTCCAC CTGCGCTTCC GCGTCCGTCG CGTGGAGGGC GGAGACCGGA GGATGATGGG AGACCTGCTC GAGGAGGACG TTGAGTGTTT  CAGCAGGACG ACGAGATGTG TCGATGATTC AGAGCGAGAG TTTGGGAAGG ATGGAGGGAG GGGACCTGTT CGAGGAGGAC GTTGAGAGAT CCTCTGGAGA CGTGGTGGGT TTCGCCGAGG  ACTGGGTTGA AGGGAGCCTG GCCGAAGACG GCAGGTCTGG TGGTCGATAT GCTCCAGGCC ACTACGGCGG CGAGCCTCTC CAGGCTGTTC TCCCCTCCGG CGCACCGCCT CAGTGCGTCA  CCGGCGATGC AGTAGACGGA CTCGCCGTAG CATTGGAGCT GGGACTTGGG CAGGTTGAAC TGAGGGGGAA GCTACATGGG AAGGAAGGGG ATGATGATAT GTGGGCGGGA ACCCTAACTG  ACGAGGAATG AAGAACGGAG GACGGGGGTG AGCCTCACCT GGAAGCGCGT GAGGTCGGAT CCCGGACGAA CGCTGCCGAA GAGGCCGAGG ACGCGCTGGA CGATGTTCGG GGTCCGGTGC  TCCGCCGCCA GCCCGCCTTC CAGAGACAGC GGCGCCGTCA GCACCGCTCT CCGCTCTGGC GGCTGCTTCT CCGTCTCGAG GACCTGACAA CCTCAAGCAG CTGTCAGAGG TAACGCCGGC  GAGCCTCGAA TGACACACAG ACGACGATAG AGAAACTTCG GCCGCGACGG CGCCGCCCAG ACTGTTCTCT CATAAAACCC ACGATCAAAA ACGAAGACCC GAATTCGAGC TCGGGGAGAA  ATCGAAACCA GGGGAAGAAC AGACGGCGGC GGAGAGCCGG CTGCTCTGTG CGGGGCATGA TGCAAGTACC ATTCCGCCGA TCACTCCGGG CCCCGCGTTG CGGGTGCTCT CCGACAGATG  CTCGCCGGCG GAGGGGAGGG GCCGGGGGTT GGTGGGGTGG GGGAGGTTGC CTCCTCGCGT CGGCGTTGTA GGAAGCTTCT TCGTGGCAGG ACCTCGACCA AAAGACACAG AATATATGCG  AACCCCACGT AACCCACCAC GAGACAGTGT GGCCGGGCCG CAGAGAGAGA AAGAGAGAGA GAGAGAGAGA GAGAGAGAGT nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn GAGAGAGAGA GAGAGAGAAT CGGCCCACCT AACGTTCTCT TACGACTGGG CACCTCCCCA  AGACAGAGAC AGCGATAGAC AGATCCTGAA AGTATTATAT CGCCTTCAGT GTCTCCTGCG CGAGAGGATC GGACGAGAAA AGGAAGACGC CGTTGTTGAG AAAGTCCGAC TCATGTATTT  TCTACTATCC CGCGGAATCT TCCTGCCCTT CTCCCTTTCT TGCCGAGTCT CCAACCTTTC CCACCTCCTT TCTCTCTCTA TAAATAGCTC AGGATGTGGA GGCTTACTGT GCAGAAAACG 
AAGGCCAAGG ATCACTAACC CCACTCCTTC ATTCTTTCTT TCTTCCCACC CACCACAAGC CCCTGCAGAT TAGGAGGCC 

Retrieve as FASTA  
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTCCCCACCAAGGCCTTCCTCTCTTCTCCAGACTGCAGCTCTCTTCTTGGCCCTGCTGCTCCACGGGTGCAGCGCCCAGCTGAGCACCAGCTTCTACGACAGCTCCTGCGCCAAC
CTGACGAGCGTCGTCACCAACGTAATCCGACAGGCACAGAACTCGGACCCCCGCATTCACGCCAGCCTCGTCAGGCTCCATTTCCACGACTGCTTCGTCGAT
GTAAGGCTCGTCCTCCCT
CTCTCCGACCTCGCCCTCCTCCAGTAGTTCCGTCTCCGTGCTCGATGATCTCATCTGTTAGGGTTCTTCCTGGGTTCCTCTAGGGTTGCGACGCCTCCATCCTGCTGGACTCCATCGGAA
GCATCCAGACCGAGAAAGACGCGGCGCCGAACAGGAACTCCGTCCGGGGCTTCGACGTGGTGGACGACATCAAGACCGCCGTCGAGAACGTCTGCCCGGGCATCGTCTCCTGCGCCGACA
TCCTGGCCCTCGCCGCTCAGATCTCCGTCGCCGAG
GTGATTGAGCTTCTGCAAGTCCTCAAAACTGACATAAATTTTAGAATAGAAATACGTCAACTTCTTTTTCCCTTGTTATCTGTTC
ATAATGAGCTAAAAGCCGTGCAATAATTGAGAAACATGTTAAAAACTGTCTGAACTCTTCCCAACGATTGGCACATCTCGAGTTGACCGAGAGGTTGCTTCTTCCTTCCCAATGGGCCGT
CAACGTTGACCCACCGAAACCAATCTCGAAAGAAGACTGACAATAAAGTGCACTCGCCATGCAGGCAGGAGGGCCCTCCTACACCGTACCGCTTGGAAGGAGGGACGGAACGACGGCGAA
CCCGTCGGGAGCCAACAGCGCCCTCCCCAGTCCCTTCGAAGGCCTCAGCGCCATCCAGTCCAAGTTCTCCGCCGTCGGCCTCGACGACACCGACCTGGTCGCCTTGTCCG
GTGAGCCTTC
TTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCAAGCCCCCCATTGCCTGACTTTATCCTTCGCGAATACCTCGTCGCAGGCGCCCACACCTTCGGGAGGGCGCAGTGCTTCACCTTCA
GCGGGCGCCTTTACAACTTCAGCGGCACCGGCAGCCCCGACCCCACGCTGGACACCAGCTACGGCGACACTCTCCGGCAGTCGTGCCCCGAGAGCGGCGGCGGGTCAACGCTGAACGACC
TCGACCCGACGACCAGGGACGCCTTCGACAACAACTACTTCACCAACCTGCAGAGCAACCGCGGGCTGCTGCAGTCGGACCAGGAGCTCTTCTCCACCAGCGGCGCCTCCACCGTCTCCA
TCGTCAACAACTTCGCCAACAGCCAGAGCACCTTCTTCCAGAGCTTCGGCAACTCCATGATCAACATGGGCAATATCAGCCCCCTCACCGGCAGCAACGGACAGATCAGGAGCGAC

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTCCCCACCAAGGCCTTCCTCTCTTCTCCAGACTGCAGCTCTCTTCTTGGCCCTGCTGCTCCACGGGTGCAGCGCCCAGCTGAGCACCAGCTTCTACGACAGCTCCTGCGCCAAC
CTGACGAGCGTCGTCACCAACGTAATCCGACAGGCACAGAACTCGGACCCCCGCATTCACGCCAGCCTCGTCAGGCTCCATTTCCACGACTGCTTCGTCGAT
GGTTGCGACGCCTCCATC
CTGCTGGACTCCATCGGAAGCATCCAGACCGAGAAAGACGCGGCGCCGAACAGGAACTCCGTCCGGGGCTTCGACGTGGTGGACGACATCAAGACCGCCGTCGAGAACGTCTGCCCGGGC
ATCGTCTCCTGCGCCGACATCCTGGCCCTCGCCGCTCAGATCTCCGTCGCCGAG
GCAGGAGGGCCCTCCTACACCGTACCGCTTGGAAGGAGGGACGGAACGACGGCGAACCCGTCGGGA
GCCAACAGCGCCCTCCCCAGTCCCTTCGAAGGCCTCAGCGCCATCCAGTCCAAGTTCTCCGCCGTCGGCCTCGACGACACCGACCTGGTCGCCTTGTCCG
GCGCCCACACCTTCGGGAGG
GCGCAGTGCTTCACCTTCAGCGGGCGCCTTTACAACTTCAGCGGCACCGGCAGCCCCGACCCCACGCTGGACACCAGCTACGGCGACACTCTCCGGCAGTCGTGCCCCGAGAGCGGCGGC
GGGTCAACGCTGAACGACCTCGACCCGACGACCAGGGACGCCTTCGACAACAACTACTTCACCAACCTGCAGAGCAACCGCGGGCTGCTGCAGTCGGACCAGGAGCTCTTCTCCACCAGC
GGCGCCTCCACCGTCTCCATCGTCAACAACTTCGCCAACAGCCAGAGCACCTTCTTCCAGAGCTTCGGCAACTCCATGATCAACATGGGCAATATCAGCCCCCTCACCGGCAGCAACGGA
CAGATCAGGAGCGAC

Retrieve as FASTA