Entry information : SpolPrx25 ( Spipo10G0044700)
Entry ID 13226
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-09 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-02-27 (Christophe Dunand)
Peroxidase information: SpolPrx25 ( Spipo10G0044700)
Name (synonym) SpolPrx25 ( Spipo10G0044700)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx25
start..stop
S start..stop
SpolPrx16 477 3e-171 22..327 28..329
VvPrx24 434 3e-154 21..325 18..323
VvPrx25 432 2e-153 21..329 18..327
MePrx33 430 1e-152 9..325 9..319
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3323893..3324882 990  
join(3323893..3324882)


exon

Literature and cross-references SpolPrx25 ( Spipo10G0044700)
DNA ref. Phytozome 12:   pseudo10 (3323893..3324882)
Cluster/Prediction ref. Phytozome Gene 12:   31520024
Protein sequence: SpolPrx25 ( Spipo10G0044700)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (308)
PWM (Da):   %s   34954.83 (33013.8)  
PI (pH):   %s   7.31 (7.31) Peptide Signal:   %s   cut: 22 range:22-329
Sequence
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MGGSAVAALV VVVVAAATAM AEGKLAVDYY AATCPRAAEI VSETVVSKQI ASPTTAAGTL RVFFHDCFLD GCDASLLVSS TAFHRAERDA DINLSLPGDA FDLVVRAKTA LELTCPGTVS  CADVLALATR DLLTMLGGPF FPVRLGRKDS LVSRADLAAA RLPLANATVS ELIALFAQRG FSAQELVALS GAHTVGFAHC KEFAARMGLD GGGKADAAAD PRYAEGVRRA CADYRSRPTV 
AVFNDIMTPN KFDNVYFQNL RRGLGLLGTD QALAGDPRTR PFVELYAADE GVFFKDFARA MEKLSVYGVK TGRQGEVRRR CDQFNAFTT* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron).
Promoter
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GGACATATTA AACGAATGTA AGCCAAGAAT TATGCAAAGA TTTAACATAA GTAGGATCGT AAAACGGGAT TCTAAAGAGA AGGAAAATGA GAGCACCATG GCGAAGTCGA TCGTATTCAG  AGCCATAGTC CGTGGCTGCA TAGGCAGCCC TCTCTGCGTC GACCCTCCCT TCTCCTCGGG CCACCCTGTC TCCTTGTTCT GCGTCCTCGT CTTCCTCGCC GTTCGTCTCT TCGAACTCAC  TCTCGTACCC ATCGTCAGGG TCTTCCCAGA ACCCCCCTGA GGGTTGAGCC CGGATGAACC AGCTCCCCTG TGACGCGCCG GCCAAAGAAC CCCGCGACGG CGATGGGGTG AGCCCAGGAA  GACGAAGGAC GGAAGGAGAG GCCACAGAGG CGGCCTTGCA TGGCGCCAAA GCCACCAGGC GGCGGAATCC GTGAGGAGAG TAGGAAGAGC GGGCCGGCCC CGCCGCGGCC GCCGACCACC  CGACCGGAGA GAGCGCCATG GCGGCTGAAC TCCAGCGAGT AGAAAGGAGG ATAAAGGTGA GCTTTTTACT CCAGCACCGC GTTGGTTTTT TTTTAGAAGT GTTATTCCGT TAAATATTTA  ATTATTCATT AATTTTTTAA AATTGGATAA ATATTTTCCA AGGAAATATA TATTTATTTT ATAAATTTTA GTATTATAAA AAAATTTATG TTCTACAATT CCGCCCTCTA TTACGCATTG  GATTTTCTGA ACTGGATATT GTACTAGAGA CGATAAACAT TTTTTAGCTA TTTTCAATGC TCTAAAAATA TTTTTAGAAA TATGTATCCA TGATTATATA TATCTTAGAT ATCATAAATG  GCAATAAGAA AGTTGACTCG TAGGTATGGG TGTTGACGGA TGGAGTTGAC CACATTCTGA ACACATCCAC ACCCAAACTG GACAAGAAAG AAACTCTTTC ATAATAAGGC CAAAGGGACA  AAGGACATTT CTCATGGTCA ACTCTGGACA TTATAAAGTC AACGTTTTTT GAAAACCATG AACAGAAACT GTCAGTGATA ATGCAAATTT CTTGGGAACT TTTAAAGTTA TTACTGATGA  TCGTTGACTT TGACCAAAGC TTTCCTGAGA AAAGTCAGCT AGCATGGCCC TCCAGCCTCG TCAGGCCCAT TGGATCCTTA GTAGGTCAGG TGACAATTGG GCCGAATGAG GCGTGGCCTA  GTAGGTTCCT AATTGGGCCC AGAGCCCACT CTCTCTCTCT CATTAGCGAG AGCGAGAGAG AGAGAGAGAG AGAGAAAGAG AGAGAGAGAG ACAGAGGGTA CTAGAAGCGG CCCATCTGGG  CCAGCCCAGG GCCCGGTTGA AAGGGACCGG TTCACAGTAC GTGTACCGCC GGTCCGGTGG AGGAGTCATG AGGTGGGCCC CACAAGTCAC GTGGTGGACT CCCCACTCGC TCGACCCAAA  TTTCTAAAAG CAGAAGCTAT GCTTACGTGG ACGACGAACC GAGCGGGACC ACCGCTGACC GGACCGTTCC GGCCCAGTGC GGACAAGGCG AGCCTTCCCG CAGTCGTAGT TGCCTGCCCC  ACCCTCACGT GCTCCCATTC GAATCGGCAC ACCACCCCAG TATCTGCGGG CCCCATCATC CCAATAATAA ATAATAATAA TAATAATCAT TAAATAATTA CTATTCAATT AATGATTATC  TCATAATATT ATCCTAGATC AATGCATAAA CATAGGGGGA TGTTTACTGC GTTAAGACCA TTTTGACCTT CATCTGTCTC TCTCTCTCTC TCTTAAACGA TGTATAACAT AAATATATCC  GTTGTAAAAC CCTACTCTCT CTCTCTCTCT CTCTAGCCAT ATCCTAAGAC GCGTCCCCAT CCCTCTTATT GTCCGTGTTT GGCTGTAGAT CTGCAAGGAT TCCTTCTCTC TCTCTCTCTC  TCTCTGTGTA GCGAGCCATT TCGTCCAGGA GGCGGTGTTG GTGGCGGATC TCTCCGGGGT TCCGCTTCGG AAGGTCTAAG ATGGGTGGGT CAGCGGTGGC GGCGCTGGTG GTGGTGGTGG  TGGCGGCGGC GACGGCAATG GCGGAGGGGA AGCTTGCGGT GGACTACTAC GCGGCGACCT GCCCGCGGGC GGCGGAGATC GTATCAGAGA CGGTGGTGAG CAAGCAGATC GCGAGCCCCA  CTACGGCGGC GGGGACCCTG CGGGTCTTCT TCCACGACTG CTTCCTCGAC GGCTGCGACG CCTCCTTGCT CGTCTCCTCC ACCGCCTTCC ACCGCGCCGA GCGCGACGCC GACATCAACC  TCTCCCTCCC CGGCGACGCC TTCGACCTCG TCGTCCGCGC CAAGACCGCC CTCGAGCTCA CCTGCCCCGG CACCGTCTCC TGCGCCGACG TCCTCGCCCT CGCCACCCGC GACCTCCTCA  CCATGCTCGG CGGCCCCTTC TTCCCCGTGC GCCTCGGGCG AAAGGACAGC CTCGTCTCAC GCGCCGACCT CGCCGCCGCG CGCCTCCCCC TCGCCAACGC CACCGTCTCC GAGCTCATCG  CGCTCTTTGC CCAGCGCGGC TTCTCGGCGC AGGAGCTGGT CGCGCTGTCC GGCGCGCACA CCGTCGGGTT TGCGCACTGC AAGGAGTTCG CCGCGCGGAT GGGGCTGGAC GGCGGCGGCA  AGGCCGATGC GGCGGCGGAT CCGCGCTATG CGGAGGGGGT GAGGAGGGCG TGCGCGGACT ACCGCAGCAG GCCGACGGTG GCGGTGTTCA ACGACATCAT GACGCCGAAC AAGTTCGACA  ACGTGTATTT CCAGAATCTG AGGAGGGGGC TGGGGCTGCT GGGGACGGAC CAGGCGCTGG CGGGGGACCC GAGGACGAGG CCGTTCGTGG AGCTCTACGC CGCCGACGAG GGCGTCTTCT 
TCAAGGACTT CGCTCGCGCC ATGGAGAAGC TCAGCGTCTA CGGGGTCAAG ACCGGCCGCC AAGGGGAGGT CCGGCGGCGC TGCGATCAGT TCAACGCCTT CACCACCTGA 

Retrieve as FASTA  
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTGGGT CAGCGGTGGC GGCGCTGGTG GTGGTGGTGG TGGCGGCGGC GACGGCAATG GCGGAGGGGA AGCTTGCGGT GGACTACTAC GCGGCGACCT GCCCGCGGGC GGCGGAGATC  GTATCAGAGA CGGTGGTGAG CAAGCAGATC GCGAGCCCCA CTACGGCGGC GGGGACCCTG CGGGTCTTCT TCCACGACTG CTTCCTCGAC GGCTGCGACG CCTCCTTGCT CGTCTCCTCC  ACCGCCTTCC ACCGCGCCGA GCGCGACGCC GACATCAACC TCTCCCTCCC CGGCGACGCC TTCGACCTCG TCGTCCGCGC CAAGACCGCC CTCGAGCTCA CCTGCCCCGG CACCGTCTCC  TGCGCCGACG TCCTCGCCCT CGCCACCCGC GACCTCCTCA CCATGCTCGG CGGCCCCTTC TTCCCCGTGC GCCTCGGGCG AAAGGACAGC CTCGTCTCAC GCGCCGACCT CGCCGCCGCG  CGCCTCCCCC TCGCCAACGC CACCGTCTCC GAGCTCATCG CGCTCTTTGC CCAGCGCGGC TTCTCGGCGC AGGAGCTGGT CGCGCTGTCC GGCGCGCACA CCGTCGGGTT TGCGCACTGC  AAGGAGTTCG CCGCGCGGAT GGGGCTGGAC GGCGGCGGCA AGGCCGATGC GGCGGCGGAT CCGCGCTATG CGGAGGGGGT GAGGAGGGCG TGCGCGGACT ACCGCAGCAG GCCGACGGTG  GCGGTGTTCA ACGACATCAT GACGCCGAAC AAGTTCGACA ACGTGTATTT CCAGAATCTG AGGAGGGGGC TGGGGCTGCT GGGGACGGAC CAGGCGCTGG CGGGGGACCC GAGGACGAGG  CCGTTCGTGG AGCTCTACGC CGCCGACGAG GGCGTCTTCT TCAAGGACTT CGCTCGCGCC ATGGAGAAGC TCAGCGTCTA CGGGGTCAAG ACCGGCCGCC AAGGGGAGGT CCGGCGGCGC 
TGCGATCAGT TCAACGCCTT CACCACCTGA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTGGGT CAGCGGTGGC GGCGCTGGTG GTGGTGGTGG TGGCGGCGGC GACGGCAATG GCGGAGGGGA AGCTTGCGGT GGACTACTAC GCGGCGACCT GCCCGCGGGC GGCGGAGATC  GTATCAGAGA CGGTGGTGAG CAAGCAGATC GCGAGCCCCA CTACGGCGGC GGGGACCCTG CGGGTCTTCT TCCACGACTG CTTCCTCGAC GGCTGCGACG CCTCCTTGCT CGTCTCCTCC  ACCGCCTTCC ACCGCGCCGA GCGCGACGCC GACATCAACC TCTCCCTCCC CGGCGACGCC TTCGACCTCG TCGTCCGCGC CAAGACCGCC CTCGAGCTCA CCTGCCCCGG CACCGTCTCC  TGCGCCGACG TCCTCGCCCT CGCCACCCGC GACCTCCTCA CCATGCTCGG CGGCCCCTTC TTCCCCGTGC GCCTCGGGCG AAAGGACAGC CTCGTCTCAC GCGCCGACCT CGCCGCCGCG  CGCCTCCCCC TCGCCAACGC CACCGTCTCC GAGCTCATCG CGCTCTTTGC CCAGCGCGGC TTCTCGGCGC AGGAGCTGGT CGCGCTGTCC GGCGCGCACA CCGTCGGGTT TGCGCACTGC  AAGGAGTTCG CCGCGCGGAT GGGGCTGGAC GGCGGCGGCA AGGCCGATGC GGCGGCGGAT CCGCGCTATG CGGAGGGGGT GAGGAGGGCG TGCGCGGACT ACCGCAGCAG GCCGACGGTG  GCGGTGTTCA ACGACATCAT GACGCCGAAC AAGTTCGACA ACGTGTATTT CCAGAATCTG AGGAGGGGGC TGGGGCTGCT GGGGACGGAC CAGGCGCTGG CGGGGGACCC GAGGACGAGG  CCGTTCGTGG AGCTCTACGC CGCCGACGAG GGCGTCTTCT TCAAGGACTT CGCTCGCGCC ATGGAGAAGC TCAGCGTCTA CGGGGTCAAG ACCGGCCGCC AAGGGGAGGT CCGGCGGCGC 
TGCGATCAGT TCAACGCCTT CACCACCTGA 

Retrieve as FASTA