Entry information : SpolPrx27 (Spipo18G0019900)
Entry ID 13229
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-17 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-06-17 (Christophe Dunand)
Peroxidase information: SpolPrx27 (Spipo18G0019900)
Name (synonym) SpolPrx27 (Spipo18G0019900)
Class Class III peroxidase    [Orthogroup: Prx183]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx27
start..stop
S start..stop
SpolPrx11 429 1e-152 1..313 1..319
SpolPrx15 418 2e-148 1..313 1..316
SpolPrx13 414 1e-146 1..313 1..320
GmPrx89 375 1e-131 12..313 13..319
Literature and cross-references SpolPrx27 (Spipo18G0019900)
Protein sequence: SpolPrx27 (Spipo18G0019900)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   314 (289)
PWM (Da):   %s   32563.19 (29923.8) Transmb domain:   %s   i7-24o
PI (pH):   %s   5.59 (4.99) Peptide Signal:   %s   cut: 25 range:25-313
Sequence
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Send to Peroxiscan
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MAATHSVSLA SLLVLLLYVF TSHAQLTANF YSSSCPNLQT IVQSAMQTAx xxxxxxASLL RLFLHDCFVQ GCDASVLLVD TATFQGEQSA GPNFNSIRGM DVIEDIKSAV EASCNRTVSC  ADILALATRD GVVLSGGPSW TVLLGRRDAT TASFDAANRD IPGPSSSLSA LTTRFANDGL SLQDLVALSG AHTIGFARCL FFRTNDVNID PNYAASVRDN CQQGGGNSLS PLDVTTPRVF 
DNAYYRNLVS LRGFLHSDQE LFNNGSADPI VQSYVASSSL FFRDFAAAMV KLGNISPPTG SSGEIRRVCS RVN* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2). Incorrect prediction from Phytozome (Exon 1 is missing due to frame shift and extra short 3' exon).
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGGCCA CACACAGCGT CTCTCTTGCC TCCCTCCTCG TTCTCCTCCT GTACGTGTTC ACCTCACACG CGCAACTGAC AGCGAACTTC TACTCGTCGA GCTGTCCCAA CCTGCAGACG  ATCGTACAAA GTGCCATGCA AACGGCCnnn nnnnnnnnnn nnnnnnnCGC CTCCCTGCTC CGCCTCTTCC TTCACGACTG CTTCGTCCAA GTAAGCGCAA GCACAGACTC CTGTAGATGA  CGGACCGCTG GTCTCTCTTC ACGCTGCCGC AACGGTTCTA ATGTCGCCGC ACGTGTGATC CTGCAGGGCT GCGACGCGTC GGTGCTCCTG GTCGACACCG CGACGTTCCA AGGCGAGCAG  AGCGCCGGCC CAAACTTTAA CTCCATTCGT GGCATGGACG TCATCGAGGA CATCAAGTCC GCCGTCGAGG CATCGTGCAA CCGCACCGTG TCGTGCGCCG ACATCCTGGC CCTCGCCACC  AGGGACGGCG TCGTCCTGGT GAGTTCTTCC CTACGACATC GTTGGGATCG TCCTGTTGAG CTTCTTTCGA ACGAATCCAC TCTCTAAACA GGGGAGGCTG CCTTCTCCAT GCAGAGCGGA  GGACCTTCGT GGACGGTGCT GCTGGGGCGG CGGGACGCCA CAACGGCCAG CTTCGACGCA GCCAATAGAG ACATCCCTGG TCCATCGTCC AGCCTCTCTG CCCTCACCAC TAGGTTCGCC  AACGACGGCC TGAGCTTGCA GGATCTCGTG GCCCTCTCCG GCGCGCACAC CATCGGCTTC GCCCGCTGCT TATTTTTCCG AACCAACGAC GTGAACATTG ACCCCAACTA TGCCGCGTCT  GTCCGCGATA ACTGCCAGCA GGGCGGCGGT AACAGCTTAT CCCCGCTCGA CGTCACCACC CCGAGGGTCT TCGACAACGC CTACTACAGA AATCTCGTGT CTCTGCGGGG TTTCCTCCAC  TCCGACCAGG AGCTCTTCAA TAATGGCTCC GCGGATCCCA TCGTCCAAAG CTACGTGGCC AGCAGCTCCC TCTTCTTCAG AGACTTTGCG GCGGCGATGG TAAAGTTGGG CAACATCAGC 
CCCCCCACCG GCTCCAGCGG GGAGATCCGG CGGGTCTGCA GCAGGGTGAA CTGA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGGCCA CACACAGCGT CTCTCTTGCC TCCCTCCTCG TTCTCCTCCT GTACGTGTTC ACCTCACACG CGCAACTGAC AGCGAACTTC TACTCGTCGA GCTGTCCCAA CCTGCAGACG  ATCGTACAAA GTGCCATGCA AACGGCCnnn nnnnnnnnnn nnnnnnnCGC CTCCCTGCTC CGCCTCTTCC TTCACGACTG CTTCGTCCAA GGCTGCGACG CGTCGGTGCT CCTGGTCGAC  ACCGCGACGT TCCAAGGCGA GCAGAGCGCC GGCCCAAACT TTAACTCCAT TCGTGGCATG GACGTCATCG AGGACATCAA GTCCGCCGTC GAGGCATCGT GCAACCGCAC CGTGTCGTGC  GCCGACATCC TGGCCCTCGC CACCAGGGAC GGCGTCGTCC TGAGCGGAGG ACCTTCGTGG ACGGTGCTGC TGGGGCGGCG GGACGCCACA ACGGCCAGCT TCGACGCAGC CAATAGAGAC  ATCCCTGGTC CATCGTCCAG CCTCTCTGCC CTCACCACTA GGTTCGCCAA CGACGGCCTG AGCTTGCAGG ATCTCGTGGC CCTCTCCGGC GCGCACACCA TCGGCTTCGC CCGCTGCTTA  TTTTTCCGAA CCAACGACGT GAACATTGAC CCCAACTATG CCGCGTCTGT CCGCGATAAC TGCCAGCAGG GCGGCGGTAA CAGCTTATCC CCGCTCGACG TCACCACCCC GAGGGTCTTC  GACAACGCCT ACTACAGAAA TCTCGTGTCT CTGCGGGGTT TCCTCCACTC CGACCAGGAG CTCTTCAATA ATGGCTCCGC GGATCCCATC GTCCAAAGCT ACGTGGCCAG CAGCTCCCTC 
TTCTTCAGAG ACTTTGCGGC GGCGATGGTA AAGTTGGGCA ACATCAGCCC CCCCACCGGC TCCAGCGGGG AGATCCGGCG GGTCTGCAGC AGGGTGAACT GA 

Retrieve as FASTA