Entry information : SpolPrx34 (Spipo3G0001300)
Entry ID 13236
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-09 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-02-24 (Catherine Mathe)
Peroxidase information: SpolPrx34 (Spipo3G0001300)
Name (synonym) SpolPrx34 (Spipo3G0001300)
Class Class III peroxidase    [Orthogroup: Prx007]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx34
start..stop
S start..stop
SpolPrx37 492 2e-177 1..318 12..327
MePrx27 485 2e-174 12..318 16..326
RcPrx27 480 6e-173 9..318 10..318
VvPrx76 479 2e-172 1..318 1..321
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 83724..83936 213 N° 2 83440..83631 192 N° 3 83196..83361 166 N° 4 82651..83036 386
complement(join(82651..83036,83196..83361,83440..83631,83724..83936))


exon

Literature and cross-references SpolPrx34 (Spipo3G0001300)
DNA ref. Phytozome 12:   pseudo3 (83936..82651)
Cluster/Prediction ref. Phytozome Gene 12:   31508096
Protein sequence: SpolPrx34 (Spipo3G0001300)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   319 (294)
PWM (Da):   %s   34617.78 (32213.5) Transmb domain:   %s   i7-29o
PI (pH):   %s   10.09 (9.96) Peptide Signal:   %s   cut: 25 range:25-318
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSSKAAVLSLALVLVFLGSSSAQLSTGFYSSSCPSLFSTVKPVVRSALSGERRLGASVVRLFFHDCFVNGCDGSLLLDDTSRFTGEKTARPNLNSVRGFEVIDRIKERVEKVCPGVVSCADILTIAARDSVEILGGPSWHVKLGRRDSRRASLDAANRDIPPPTADLSTLISSFRSKGLSVRDLVALSGSHTIGQARCTTFRNRIYNETNIDRSFARQRRANCGRTSGDNNLAPLDLQTPNGFDNNYFKNLIKQKGLLHSDQELFNGGSTDSLVRTYVKNPHAFESDFAAAMIKMGDISPLTGSRGEIRKNCRRIN*

Retrieve as FASTA  
Remarks
Promoter
Send to BLAST
Send to cis Analysis
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AATAATGTAT TATATTGTGT AGTGCAAAAG TATTGGGATG TATTGATGAG TGGAGCAGAA AATTTATAAA CTCAAGTTTC AGTTTTGTTC TATTCAGATA CGTAATATAG CATAAATAAA  TATTTGTCCC ATGTGAAACA AATTTTAATA GCTTGCAGTT TAAGATCACT ATTATTTTTT ATATTCTATT AAGGTCATGG ATAATACAGG CTAAAATGAG AAGGATAGGC TTATTTGTCA  TGTTATAAGG TTTTTTTGTT CTTCCTATTT CTGAAGAATA ATTATAGTAA GACAATCTTT TTAAGATTTG AACAACAGTA GATGAAACAT AGGAGTGGTG ATGGTTGGGT TAATACAGTT  TGCCTAACTG AAAAGTTCCC TCACCCATAT GAACGGTTCC ACGACTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCGCTCTAA GCGCCTAATT CCCCATGGTC  AGACATCTCT TAGGTCTGGA TCAGATTTGT TAATACCATG GTATGGCAGT TAATGGAGTA TATTGGTGCC TCTTAGGCAA GAAATTTATG GAGGTAAGAA TGTAATAAAT AATTCCATAT  TTCATGCTAG TTTCATCTTA CTTACGCTGT GATTGTAACA TTTATGGTTC CTAACCTTTT TGTCCCTAGA ACATTCACAT CAAAGGTAAA TTTAACCCAC ATTAAAATCC CAATAAAATT  ATACACGGTA AATAATGAAT ATTTAATTCT TAAAATAGTT AAACTTAATG TAATTATATC AATCATAATG ATATTTAAAA TTTAGAAACA TCTTAATAAC CGATTTAATA TATTTTTAGT  AACCGTAATT GGTGATATTA TTTTCATTCA CATTTGTGCT AAAAAAAAAC TCAATTACTT GGTAGACCTA CCCAAGCACG ACAAATGAGA GGGAGAGGGG GCGAGGAAGA GTAGGGGAAT  AGTCCGTGAC GATCCGAACT TTTCTTTGGA CCCCAAAAGT CCGTTGAGGT TCCTTTCTGT ACTTCATTTC GGGCCAGTCC GAAGGCTATA ATTGGCCGGG TCGGACTCAT GGTTGCGTGT  CTCATCCATT TCTCCAGGTC GGCGTACGTC TGTATTTGGT CTTTCCGGCC ATATTTAAAG TTCCTCCGTC ACTGCCTACT TTAAATGTGT CTGGTACAGA TAAAACGAGG AGAAACTAAC  TTTTAATAAT ATCATATTTA ATGTTTCGTG ACCGTCGTCG TCAACGACGG TTTCGCGTTA TCTGATAATT AACCCGCTTA GACGACAAAA AATAATAATG CCAATCGCCG TATTCATAAC  CGACATGAAT CTCTCTTTTC CGATGACTAA AACGGGCACA AATGAACAGG CTCTCCACGA TCACCGCGAT ATGGAAATGG ATGATATCCG ACGCAATATT CACAAGTAGA TGTTTGTATG  TTCCTAAGAA GGTTTCCCGT TACGTGCAAT GTGTGTATGA GTGTGGGGAT GAGTATACTC ACGCATACAC AGATACACAC ACACACACAC ACACACATAT ATATATATAT TTAATATAAT  ACCACATATA TGTATCTGTC TTCCAGATGA TGTGGAAATA GTCAGCACGA ATCCGACTCT CATCCTACTC CGTCGACTTT CTCTTCAGGC GACCACGTCT GGGACATATA TACCACAGAT  TGCTTCCGGG GATCAGTTCA ATTTGTTGAC TATTGCTTAG ATTAAACATA GATTAGAGGG ACGGTTCGGT AAGCTTGTTT GACTTATCTC CACTGACCCC ACTTCTTGAA GCGGTCGTGT  GATGGAGTTG TCATCTTCTG ATCACGGTGT GCGACATACA ACCTCGTTTT GATCCCCCTA TGTGGAGAAC TAGTCTCATG GAGTAGGTGA AGACAGACTT TTCCTGCTTT TCTCCGCTAT  AAATTCGAGA ACGGATGTAT CCTAATTGAA CGAGCACATC CTCTTCTTAA GATCCTCTGG TCACTGTTCA CAGAGAAACA ATGGCTTCGT CTTCCAAGGC CGCAGTCCTT TCTCTTGCTC  TTGTACTTGT TTTCCTTGGG AGTTCGTCGG CTCAACTGTC CACAGGCTTC TACTCTTCGT CTTGCCCGAG CCTTTTTAGC ACCGTGAAAC CTGTCGTCCG GTCGGCGCTC TCTGGTGAGA  GGCGCTTAGG GGCGTCTGTG GTCCGCCTGT TCTTCCACGA CTGCTTTGTC AACGTAATCA GTTGTCCCAC ACGCATCGCT TCCATTATCT CTTCTTGCAC TCGTACGTGT CCCGAAGACC  CTATTTTTAC CGTTTAAAAC TGCAGGGTTG CGACGGATCG CTTCTTCTAG ACGACACTTC GAGATTCACC GGGGAGAAGA CCGCGAGGCC TAACCTAAAC TCAGTCAGAG GATTCGAAGT  CATTGACAGG ATTAAGGAAC GAGTAGAGAA GGTGTGCCCC GGGGTAGTCT CTTGCGCCGA CATCTTGACC ATTGCTGCCA GAGATTCAGT TGAGATCGTA AGTCAGCTAC AGCTCCCTCA  ACTATTGCAG TTTATATGCT CTTCTCTGGC TGACTGATGA CCATACACTG TGCAGTTAGG AGGTCCCAGT TGGCACGTGA AACTCGGAAG ACGGGACTCG AGGAGGGCGA GCCTGGACGC  TGCCAACAGG GATATTCCCC CTCCCACCGC CGACCTTTCA ACACTTATCT CCAGTTTCCG ATCCAAGGGA CTCTCAGTTA GAGACCTGGT AGCGCTGTCA GGTATACCAA ACCTTTCTTC  CTCAAGTCCC TTCGCATAGC TTATCTGACA AGCTTATGTC ATCAGATGCA TACGCAGTTT AAAGGCGTAT CTTGTACTGT ATGATGCTAT TAGCTCTTCT CACCCCTGTT CTCCGGCAAT  GACCCCACCC TGGATCACAG GGTCTCACAC CATCGGGCAA GCGCGGTGTA CTACCTTCCG GAATCGCATA TACAACGAGA CCAACATCGA CAGGTCCTTC GCGAGGCAGA GGAGGGCGAA  CTGCGGGAGA ACCTCTGGCG ACAACAACCT GGCTCCGCTA GACCTGCAGA CACCCAATGG CTTCGACAAC AACTACTTCA AGAACCTGAT CAAGCAGAAG GGCCTCCTCC ACTCCGACCA  GGAGCTGTTC AACGGCGGCT CCACCGACTC GCTTGTCCGG ACCTACGTCA AGAATCCCCA CGCATTTGAA TCCGACTTTG CAGCCGCCAT GATTAAGATG GGCGATATCA GTCCCCTCAC 
CGGCTCCAGA GGGGAGATCA GGAAGAACTG CAGGAGGATC AACTAA 

Retrieve as FASTA  
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCGTCTTCCAAGGCCGCAGTCCTTTCTCTTGCTCTTGTACTTGTTTTCCTTGGGAGTTCGTCGGCTCAACTGTCCACAGGCTTCTACTCTTCGTCTTGCCCGAGCCTTTTTAGC
ACCGTGAAACCTGTCGTCCGGTCGGCGCTCTCTGGTGAGAGGCGCTTAGGGGCGTCTGTGGTCCGCCTGTTCTTCCACGACTGCTTTGTCAAC
GTAATCAGTTGTCCCACACGCATCGCT
TCCATTATCTCTTCTTGCACTCGTACGTGTCCCGAAGACCCTATTTTTACCGTTTAAAACTGCAGGGTTGCGACGGATCGCTTCTTCTAGACGACACTTCGAGATTCACCGGGGAGAAGA
CCGCGAGGCCTAACCTAAACTCAGTCAGAGGATTCGAAGTCATTGACAGGATTAAGGAACGAGTAGAGAAGGTGTGCCCCGGGGTAGTCTCTTGCGCCGACATCTTGACCATTGCTGCCA
GAGATTCAGTTGAGATC
GTAAGTCAGCTACAGCTCCCTCAACTATTGCAGTTTATATGCTCTTCTCTGGCTGACTGATGACCATACACTGTGCAGTTAGGAGGTCCCAGTTGGCACGTGA
AACTCGGAAGACGGGACTCGAGGAGGGCGAGCCTGGACGCTGCCAACAGGGATATTCCCCCTCCCACCGCCGACCTTTCAACACTTATCTCCAGTTTCCGATCCAAGGGACTCTCAGTTA
GAGACCTGGTAGCGCTGTCAG
GTATACCAAACCTTTCTTCCTCAAGTCCCTTCGCATAGCTTATCTGACAAGCTTATGTCATCAGATGCATACGCAGTTTAAAGGCGTATCTTGTACTGT
ATGATGCTATTAGCTCTTCTCACCCCTGTTCTCCGGCAATGACCCCACCCTGGATCACAGGGTCTCACACCATCGGGCAAGCGCGGTGTACTACCTTCCGGAATCGCATATACAACGAGA
CCAACATCGACAGGTCCTTCGCGAGGCAGAGGAGGGCGAACTGCGGGAGAACCTCTGGCGACAACAACCTGGCTCCGCTAGACCTGCAGACACCCAATGGCTTCGACAACAACTACTTCA
AGAACCTGATCAAGCAGAAGGGCCTCCTCCACTCCGACCAGGAGCTGTTCAACGGCGGCTCCACCGACTCGCTTGTCCGGACCTACGTCAAGAATCCCCACGCATTTGAATCCGACTTTG
CAGCCGCCATGATTAAGATGGGCGATATCAGTCCCCTCACCGGCTCCAGAGGGGAGATCAGGAAGAACTGCAGGAGGATCAACTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCGTCTTCCAAGGCCGCAGTCCTTTCTCTTGCTCTTGTACTTGTTTTCCTTGGGAGTTCGTCGGCTCAACTGTCCACAGGCTTCTACTCTTCGTCTTGCCCGAGCCTTTTTAGC
ACCGTGAAACCTGTCGTCCGGTCGGCGCTCTCTGGTGAGAGGCGCTTAGGGGCGTCTGTGGTCCGCCTGTTCTTCCACGACTGCTTTGTCAAC
GGTTGCGACGGATCGCTTCTTCTAGAC
GACACTTCGAGATTCACCGGGGAGAAGACCGCGAGGCCTAACCTAAACTCAGTCAGAGGATTCGAAGTCATTGACAGGATTAAGGAACGAGTAGAGAAGGTGTGCCCCGGGGTAGTCTCT
TGCGCCGACATCTTGACCATTGCTGCCAGAGATTCAGTTGAGATC
TTAGGAGGTCCCAGTTGGCACGTGAAACTCGGAAGACGGGACTCGAGGAGGGCGAGCCTGGACGCTGCCAACAGG
GATATTCCCCCTCCCACCGCCGACCTTTCAACACTTATCTCCAGTTTCCGATCCAAGGGACTCTCAGTTAGAGACCTGGTAGCGCTGTCAG
GGTCTCACACCATCGGGCAAGCGCGGTGT
ACTACCTTCCGGAATCGCATATACAACGAGACCAACATCGACAGGTCCTTCGCGAGGCAGAGGAGGGCGAACTGCGGGAGAACCTCTGGCGACAACAACCTGGCTCCGCTAGACCTGCAG
ACACCCAATGGCTTCGACAACAACTACTTCAAGAACCTGATCAAGCAGAAGGGCCTCCTCCACTCCGACCAGGAGCTGTTCAACGGCGGCTCCACCGACTCGCTTGTCCGGACCTACGTC
AAGAATCCCCACGCATTTGAATCCGACTTTGCAGCCGCCATGATTAAGATGGGCGATATCAGTCCCCTCACCGGCTCCAGAGGGGAGATCAGGAAGAACTGCAGGAGGATCAACTAA

Retrieve as FASTA