Entry information : GbPrx08 (gba_locus_7382_iso_1_len_1259_ver_2)
Entry ID 1324
Creation 2005-06-21 (Christophe Dunand)
Last sequence changes 2015-02-15 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbPrx08 (gba_locus_7382_iso_1_len_1259_ver_2)
Name (synonym) GbPrx08 (gba_locus_7382_iso_1_len_1259_ver_2)
Class Class III peroxidase    [Orthogroup: Prx147]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx08
start..stop
S start..stop
GbPrx09 493 1e-177 12..324 5..316
PtaPrx43 488 9e-176 18..324 10..318
PabPrx79 479 4e-172 12..324 8..318
PtaPrx18 477 2e-171 14..324 1..312
Literature and cross-references GbPrx08 (gba_locus_7382_iso_1_len_1259_ver_2)
Literature Brenner,E.D., Twigg,R.W., Runko,S.J., Katari,M.S., Dedhia,N.N., O'Shaughnessy,A.L., Balija,V., Martienssen,R.A., McCombie,R.W., Benfey,P., Coruzzi,G. and Stevenson,D. Expressed tag sequences from Ginkgo megasporophyll
EST ref. GenBank:   CB094345.1 [3' end]
Protein sequence: GbPrx08 (gba_locus_7382_iso_1_len_1259_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   324
PWM (Da):   %s   34705.22 Transmb domain:   %s   i9-31o
PI (pH):   %s   8.85
Sequence
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Send to Peroxiscan
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MAADLSPVIL TRRFACMMSF WILLFCTAYG WQLSSTFYHK SCPQVLTTVR AAVRAAVAKE PRMGASLLRL HFHDCFVNGC DGSILLDDTS TFTGEKTAVP NNNSARGFEV VDDIKSRVEK  VCSGVVSCAD ILAIAARDSV VQLGGPTWTV LLGRRDSRTA SLSGANNNIP APNSTLANLI SKFQAQGLSA KDMVTLSGGH TIGQARCTNF RSRIYNETNI ESTFAASLKG NCPSTGGDNN 
LSPLDGTTNS FDNNYYVNLK AQKGLLHSDQ ELFNGGSTVS QVNSYASNSK SFFTDFASAM VKMGNIKPLT GTNGQIRSNC RKPN 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and 1 EST (hx18h02.b1.b from the Vicogenta database).
CDS
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ATGGCTGCGG ATCTCTCTCC AGTTATATTA ACGAGAAGAT TTGCATGTAT GATGAGTTTC TGGATCTTGC TCTTTTGCAC TGCTTATGGC TGGCAGCTGA GTTCAACCTT TTATCACAAG  TCGTGTCCAC AGGTCTTGAC CACCGTTAGA GCTGCCGTCA GGGCTGCAGT AGCAAAGGAG CCTCGAATGG GTGCATCCTT GCTCCGTCTT CACTTTCACG ACTGTTTCGT TAATGGCTGC  GATGGATCTA TACTGTTGGA CGACACCTCA ACATTTACTG GCGAAAAGAC GGCAGTTCCC AACAATAATT CAGCGAGAGG TTTCGAAGTG GTAGACGACA TTAAGTCTCG AGTAGAGAAA  GTTTGTAGCG GAGTGGTGTC TTGTGCCGAC ATTCTGGCCA TCGCTGCGCG TGATTCTGTT GTACAATTGG GAGGTCCAAC ATGGACAGTG CTGCTGGGAA GGAGAGACTC GAGAACTGCG  AGTCTGAGTG GAGCCAACAA CAACATCCCA GCGCCCAATT CGACTCTCGC CAATCTCATC TCTAAATTCC AAGCGCAGGG CCTCTCTGCC AAGGACATGG TTACGCTCTC AGGTGGGCAT  ACAATCGGGC AAGCGCGATG CACCAACTTC AGAAGCCGCA TATACAACGA GACCAACATA GAGAGCACAT TTGCGGCTTC TCTGAAGGGA AATTGCCCCT CCACGGGAGG CGACAACAAC  CTCTCTCCTC TGGATGGGAC GACCAACTCC TTCGACAACA ACTACTATGT AAATCTGAAA GCTCAGAAGG GTCTTCTCCA CTCTGATCAG GAGCTCTTCA ATGGCGGCTC TACAGTTTCT  CAGGTCAACT CCTACGCCTC AAATTCCAAA TCTTTCTTCA CGGACTTCGC CTCTGCGATG GTGAAGATGG GAAACATCAA ACCCCTCACC GGCACCAACG GACAGATCCG AAGCAACTGC 
AGGAAGCCCA ACTGA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTTTGCCCGA ATTATAATGA GCTCCATAGC AAAGCAGTAC TCTCTGTCTG CAATTTCTGT ATTAAGAACG ATGGCTGCGG ATCTCTCTCC AGTTATATTA ACGAGAAGAT TTGCATGTAT  GATGAGTTTC TGGATCTTGC TCTTTTGCAC TGCTTATGGC TGGCAGCTGA GTTCAACCTT TTATCACAAG TCGTGTCCAC AGGTCTTGAC CACCGTTAGA GCTGCCGTCA GGGCTGCAGT  AGCAAAGGAG CCTCGAATGG GTGCATCCTT GCTCCGTCTT CACTTTCACG ACTGTTTCGT TAATGGCTGC GATGGATCTA TACTGTTGGA CGACACCTCA ACATTTACTG GCGAAAAGAC  GGCAGTTCCC AACAATAATT CAGCGAGAGG TTTCGAAGTG GTAGACGACA TTAAGTCTCG AGTAGAGAAA GTTTGTAGCG GAGTGGTGTC TTGTGCCGAC ATTCTGGCCA TCGCTGCGCG  TGATTCTGTT GTACAATTGG GAGGTCCAAC ATGGACAGTG CTGCTGGGAA GGAGAGACTC GAGAACTGCG AGTCTGAGTG GAGCCAACAA CAACATCCCA GCGCCCAATT CGACTCTCGC  CAATCTCATC TCTAAATTCC AAGCGCAGGG CCTCTCTGCC AAGGACATGG TTACGCTCTC AGGTGGGCAT ACAATCGGGC AAGCGCGATG CACCAACTTC AGAAGCCGCA TATACAACGA  GACCAACATA GAGAGCACAT TTGCGGCTTC TCTGAAGGGA AATTGCCCCT CCACGGGAGG CGACAACAAC CTCTCTCCTC TGGATGGGAC GACCAACTCC TTCGACAACA ACTACTATGT  AAATCTGAAA GCTCAGAAGG GTCTTCTCCA CTCTGATCAG GAGCTCTTCA ATGGCGGCTC TACAGTTTCT CAGGTCAACT CCTACGCCTC AAATTCCAAA TCTTTCTTCA CGGACTTCGC  CTCTGCGATG GTGAAGATGG GAAACATCAA ACCCCTCACC GGCACCAACG GACAGATCCG AAGCAACTGC AGGAAGCCCA ACTGATCCAT CCCATCCTCA TCCCATTCTT TGCCTCTTGC  AATAATTACT CTTCTGCCAG ATGTTGTAAT GTAATGAATT AACATCTGAA TTCACTTGTT AAAGGCAATG CACAATGAGT TGATTTCAGA TTGATTAATC GGTTTTTGTT TGTTATATTA 
AGTCATGTTT GTATGTGCGA ATATTGCTCA ACTTTCTCCC CCCTCTAATG AAACATACG 

Retrieve as FASTA