Entry information : SpolPrx37 (Spipo6G0060200)
Entry ID 13240
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-09 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-02-24 (Catherine Mathe)
Peroxidase information: SpolPrx37 (Spipo6G0060200)
Name (synonym) SpolPrx37 (Spipo6G0060200)
Class Class III peroxidase    [Orthogroup: Prx007]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx37
start..stop
S start..stop
SpolPrx34 492 2e-177 12..327 1..318
PtPrx41 468 1e-167 15..327 12..325
NtPrx11-1A 465 8e-167 12..327 1..321
PbPrx09 465 2e-166 16..327 13..325
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5378736..5378969 234 N° 2 5378467..5378658 192 N° 3 5377586..5377751 166 N° 4 5377042..5377433 392
complement(join(5377042..5377433,5377586..5377751,5378467..5378658,5378736..5378 969))


exon

Literature and cross-references SpolPrx37 (Spipo6G0060200)
DNA ref. Phytozome 12:   pseudo6 (5378969..537704)
Cluster/Prediction ref. Phytozome Gene 12:   31506199
Protein sequence: SpolPrx37 (Spipo6G0060200)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (296)
PWM (Da):   %s   35749.26 (32298.5) Transmb domain:   %s   i12-34o
PI (pH):   %s   10.41 (10.13) Peptide Signal:   %s   cut: 32 range:32-327
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MHRRSPKHQPAMASSVIPAVFMLFFLGGATAQLSKNFYSKSCPGVFDAVKPVVQSAISDEKRIGASIIRLFFHDCFVQGCDGSILLDDTGNFTGEKTARPNNNSVRGFSVIDRIKSRVEKVCPGVVSCADILTIAARDSTVILGGPSWRVKLGRRDSRTANITAANSDLPPGSANLTTLIRSFRDKGLSTKDMVALSGSHTLGQARCVTFRARIYNQTNIDPSFARTRQSRCPRDSNSGNNNLAPLDVQTPNVFDNNYFKNLIDQKGLLNSDQVLFNGGSTDSLVRKYVRNPKAFDSDFAKAMIKMGDIDPLTGSQGEIRKNCRRVN*

Retrieve as FASTA  
Remarks
Promoter
Send to BLAST
Send to cis Analysis
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGCCTATGTT GGATTCCGAA GGATCACACA CCATTGGACA GGCAAGGTGC ACGACGTTTC GCAGTAGAGT GTATAACGAC AGCAACATCA ACTCTTCATT TGCGACATCA AAGCAGTCCA  GCTGCCCCAG ATCTGGTAGC GACGACCAGC TTTCACCCCT CGACACCTCG ACACCTTCCT TCTTTGACGG CTGTTACTAC AAGAACTTAG TAGGCAACAA GGGTCTTCTC CACTCGGACC  AGGAGCTCTT CAATGGGGGT TCTACGGATT CCCAGGTTAG CAACTACGCC AAGAATCCAA CGAAGTTCTT CACCGACTTC GCGACGGCTA TGGTGAAGAT GGGGAGCATC AGCCCTCTCC  TGTCTCCGAG CGGGGAAGTC AGAGTCAACT GTAGGAAGAC AAACTGATCA ATTCTGAGAA GCCACTGGTC GTCGTCACCC TGATGATGGT TCGATTGACA AATCCTACTA GACATGCGCG  AGCATCTTGC TGAAACCAGT AAGATGAATG GTGTGGTAGT GTTGAAATCA TGCATCCACA AGGGCAATAA ATCGGGTTAT ATAATATCAT TGCAGTATAT TGCTCCCATA TGATGTGCAA  ATAATACAAA ATATGTGTAA GATATATTTA TTGAGAGAGG GATATACGTT GGTACGAATG CACATACATA TATAATTACC GATACCAATG GTCATAACTG AAAGTTTCCT TGTGACGAAA  CCGTGAGGTT CCTGATTAGA AGTTTTTCCG CCCCAAACCC AACGAAGCCA TTTGAGTTGG GCTGTCCCCA TCGTTGCGAA AGTGACGATT TTCATTGAGG AAGGATCGCA CTGATATATC  ATCTGTTATC GTCACCAAGT GTTAAGAGCT CCCCCAGAAT GCATGGTGAT AAAAGGGAAG ACGGAGACAA CGGAGGATAT CGGAAGACCA TAATTGTAAA TGCACCGCGC ACGTCAGTAG  GTTATCTCAT TCACATGTCC CTTTCTATGT CTATCCCTCC CTCTTTATCC TTGAGGAAGG AGTTCCTCCT CTCTGTCCGT GTCCGTATGT CTGTCTGTCT GTCTCTATCT CTGTCTCAGG  AGGCTGGGGT GATTCCCCCA ACAAAACTTC ACAATATCAG GTGGTAGATG GGAGTGATGG GCGAGATAGC TTTCGTTTGA ATGGAAACTA CTAATAATAG TACGTTGGCG CCAGTTAAGT  GGTGAAATTC GAATTTTCAG CGTCTTTCGT TCGCCAGTCT TTCGGTCGGC GAGGTAATCA AGTGCATAGA GAAAAGACAC GAAAATGGGC TTAAGTACAA ATCCATGGCT TCCTTTTTTA  CGTGACGAGA TCTAGCCCAA CCAATCGCAA GATGAGTGCC GCAGAAGGCC GTCATTGACG GAGCAGCAGG GACATGGCGA TAGCCTTCTA AGCGTCTAGA CTTCAGGGAC AGGTCTTCGC  CAAAGTCCAT ATAACTTGAA ATTATTGTCG ATGTTCAAGC CTGAGAAGTT TATTGTTGGC TGGGCCACGC TTCTGGAGTA TTCTAGTCCG CTCGAAAATC CCCAAGGCAA TCCTTTCGAA  CTACTCTGGC CAGACGACTT TAAGCCCTCA ATTGGAACAT TTCTTATTGG AAACTCGGGT TTACTCTCTT GGTACTTCAT TAATTTAGAT GTCATCCTAT ACTGTAACAT AATTGATCAA  TATATCATCC CATGTACTTG CGATAAAGAT AGAGATATTT TAGTCGAGGG ATCATATCTC TGAACAAAGA CGTAGGGTCA GGGTGCCAGC GGCCGGCCGA TCTTATGTCG CCTCAACAGC  GATCGAAGGG GGGGACAACG AAAGGCGCAG CACTGATACG ACCGACAACA AAAGAGAAAT CGTACCCACC ATGTGGGTGG GGTTTCAATT TGTTGACCTT TCAAGTTCGT CACCCCCCCT  CCCCCCATCT TCATCCAGTC AAGAATCATT CCTACAAATG CTACACTCCG AACATTAGGC AGCCACACGC TTAATGAGCC ATGCATCGCC GAAGTCCAAA GCACCAGCCG GCGATGGCGT  CCTCCGTCAT CCCGGCAGTC TTCATGCTCT TTTTCCTCGG CGGCGCCACA GCGCAGCTCT CCAAGAACTT CTACTCCAAG TCATGCCCCG GAGTCTTCGA CGCCGTGAAA CCCGTTGTTC  AGTCCGCGAT CTCAGATGAG AAGCGCATCG GTGCTTCCAT TATCCGTCTT TTCTTCCACG ATTGCTTTGT GCAGGTATTC CTCCATAGAT TGGTGAGGGG TTATCCTGGC TCTTTGAAAC  TCTTCTCTCA CTTGAGAGAC TATTTTTCCA GGGTTGCGAT GGATCAATAC TCCTCGACGA CACTGGAAAT TTTACCGGGG AGAAGACAGC GAGACCCAAC AACAACTCCG TCAGAGGATT  CTCCGTCATA GACAGGATCA AGTCTCGAGT CGAGAAGGTG TGCCCAGGCG TAGTGTCATG CGCCGACATT CTGACGATCG CTGCCCGGGA TTCAACGGTC ATAGTAAGTA TTCATGCAAC  GCAGACCTCT CTCTCTCTCn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT  CTCTCTTTCT CTCTCTCTAT TCGCATACTT CTGAATGATT TTATTTGTTG TGCGTTGATT CTACGTTGAA AGAATCGATT CACTGTGCTT CATATGTTCT ACAGTAGCAT TGAGGAATCA  AATCACCTGA CGCTACACGA TTTATTTAGT GAATTACTCT TAACAAATGC CTTTCCTCCA TTGATCCACT TCTCATGCAA TCAACGATTG ATGTGAAGCT GGGGGGCCCA AGCTGGAGAG  TGAAACTGGG GAGAAGAGAT TCAAGAACAG CTAACATCAC TGCCGCAAAC AGCGACCTCC CTCCTGGCAG TGCCAACCTC ACTACCCTCA TCAGAAGTTT CAGAGATAAG GGCCTCTCAA  CAAAAGACAT GGTGGCTTTG TCAGGTACAT CAGATGTGAT CCCTCTTCTC AGGTTTTACA CGTATTCTCC CTGGGATTAA GCTTACTCTA CGGATTGCCA ATTTATTTAA ATTTAAAACA  TTTATGTTTA AATATATTCA CTTGTATTAA TGTTCGTCAC CTTTGAAACC AATCAGGATC TCATACTTTA GGACAAGCTC GCTGCGTGAC CTTCAGAGCC CGGATATACA ATCAGACCAA  CATCGACCCC TCCTTTGCTA GAACGAGGCA ATCTCGCTGC CCGAGAGATT CCAACTCCGG CAATAACAAC CTGGCACCTC TCGACGTCCA GACTCCCAAT GTCTTTGACA ACAACTACTT  CAAGAACCTG ATCGACCAGA AGGGTCTCTT GAATTCAGAC CAGGTGCTCT TCAATGGTGG CTCTACCGAC TCCCTCGTCA GGAAGTACGT CAGAAACCCT AAGGCGTTTG ACTCTGACTT 
CGCCAAAGCG ATGATCAAGA TGGGGGACAT CGATCCACTT ACTGGCTCTC AGGGAGAGAT CAGGAAGAAC TGTAGAAGGG TGAACTGA 

Retrieve as FASTA  
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATCGCCGAAGTCCAAAGCACCAGCCGGCGATGGCGTCCTCCGTCATCCCGGCAGTCTTCATGCTCTTTTTCCTCGGCGGCGCCACAGCGCAGCTCTCCAAGAACTTCTACTCCAAG
TCATGCCCCGGAGTCTTCGACGCCGTGAAACCCGTTGTTCAGTCCGCGATCTCAGATGAGAAGCGCATCGGTGCTTCCATTATCCGTCTTTTCTTCCACGATTGCTTTGTGCAG
GTATTC
CTCCATAGATTGGTGAGGGGTTATCCTGGCTCTTTGAAACTCTTCTCTCACTTGAGAGACTATTTTTCCAGGGTTGCGATGGATCAATACTCCTCGACGACACTGGAAATTTTACCGGGG
AGAAGACAGCGAGACCCAACAACAACTCCGTCAGAGGATTCTCCGTCATAGACAGGATCAAGTCTCGAGTCGAGAAGGTGTGCCCAGGCGTAGTGTCATGCGCCGACATTCTGACGATCG
CTGCCCGGGATTCAACGGTCATA
GTAAGTATTCATGCAACGCAGACCTCTCTCTCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTATTCGCATACTTCTGAATGATTTTATTTGTTGTGCGTTGATTCTACGTTGAAAGAATCGATT
CACTGTGCTTCATATGTTCTACAGTAGCATTGAGGAATCAAATCACCTGACGCTACACGATTTATTTAGTGAATTACTCTTAACAAATGCCTTTCCTCCATTGATCCACTTCTCATGCAA
TCAACGATTGATGTGAAGCTGGGGGGCCCAAGCTGGAGAGTGAAACTGGGGAGAAGAGATTCAAGAACAGCTAACATCACTGCCGCAAACAGCGACCTCCCTCCTGGCAGTGCCAACCTC
ACTACCCTCATCAGAAGTTTCAGAGATAAGGGCCTCTCAACAAAAGACATGGTGGCTTTGTCAG
GTACATCAGATGTGATCCCTCTTCTCAGGTTTTACACGTATTCTCCCTGGGATTAA
GCTTACTCTACGGATTGCCAATTTATTTAAATTTAAAACATTTATGTTTAAATATATTCACTTGTATTAATGTTCGTCACCTTTGAAACCAATCAGGATCTCATACTTTAGGACAAGCTC
GCTGCGTGACCTTCAGAGCCCGGATATACAATCAGACCAACATCGACCCCTCCTTTGCTAGAACGAGGCAATCTCGCTGCCCGAGAGATTCCAACTCCGGCAATAACAACCTGGCACCTC
TCGACGTCCAGACTCCCAATGTCTTTGACAACAACTACTTCAAGAACCTGATCGACCAGAAGGGTCTCTTGAATTCAGACCAGGTGCTCTTCAATGGTGGCTCTACCGACTCCCTCGTCA
GGAAGTACGTCAGAAACCCTAAGGCGTTTGACTCTGACTTCGCCAAAGCGATGATCAAGATGGGGGACATCGATCCACTTACTGGCTCTCAGGGAGAGATCAGGAAGAACTGTAGAAGGG
TGAACTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATCGCCGAAGTCCAAAGCACCAGCCGGCGATGGCGTCCTCCGTCATCCCGGCAGTCTTCATGCTCTTTTTCCTCGGCGGCGCCACAGCGCAGCTCTCCAAGAACTTCTACTCCAAG
TCATGCCCCGGAGTCTTCGACGCCGTGAAACCCGTTGTTCAGTCCGCGATCTCAGATGAGAAGCGCATCGGTGCTTCCATTATCCGTCTTTTCTTCCACGATTGCTTTGTGCAG
GGTTGC
GATGGATCAATACTCCTCGACGACACTGGAAATTTTACCGGGGAGAAGACAGCGAGACCCAACAACAACTCCGTCAGAGGATTCTCCGTCATAGACAGGATCAAGTCTCGAGTCGAGAAG
GTGTGCCCAGGCGTAGTGTCATGCGCCGACATTCTGACGATCGCTGCCCGGGATTCAACGGTCATA
CTGGGGGGCCCAAGCTGGAGAGTGAAACTGGGGAGAAGAGATTCAAGAACAGCT
AACATCACTGCCGCAAACAGCGACCTCCCTCCTGGCAGTGCCAACCTCACTACCCTCATCAGAAGTTTCAGAGATAAGGGCCTCTCAACAAAAGACATGGTGGCTTTGTCAG
GATCTCAT
ACTTTAGGACAAGCTCGCTGCGTGACCTTCAGAGCCCGGATATACAATCAGACCAACATCGACCCCTCCTTTGCTAGAACGAGGCAATCTCGCTGCCCGAGAGATTCCAACTCCGGCAAT
AACAACCTGGCACCTCTCGACGTCCAGACTCCCAATGTCTTTGACAACAACTACTTCAAGAACCTGATCGACCAGAAGGGTCTCTTGAATTCAGACCAGGTGCTCTTCAATGGTGGCTCT
ACCGACTCCCTCGTCAGGAAGTACGTCAGAAACCCTAAGGCGTTTGACTCTGACTTCGCCAAAGCGATGATCAAGATGGGGGACATCGATCCACTTACTGGCTCTCAGGGAGAGATCAGG
AAGAACTGTAGAAGGGTGAACTGA

Retrieve as FASTA