Entry information : SpolPrx41 (Spipo3G0065000)
Entry ID 13244
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-17 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-06-17 (Christophe Dunand)
Peroxidase information: SpolPrx41 (Spipo3G0065000)
Name (synonym) SpolPrx41 (Spipo3G0065000)
Class Class III peroxidase    [Orthogroup: Prx014]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx41
start..stop
S start..stop
SpolPrx05 605 0 1..325 1..325
SpolPrx18 406 2e-143 9..321 8..311
CclPrx110 401 3e-141 9..325 11..328
SoPrx12 400 1e-140 9..325 14..331
Literature and cross-references SpolPrx41 (Spipo3G0065000)
Protein sequence: SpolPrx41 (Spipo3G0065000)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (301)
PWM (Da):   %s   34666.53 (32084.1)  
PI (pH):   %s   5.21 (5.18) Peptide Signal:   %s   cut: 25 range:25-325
Sequence
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MGFRETGALL LTLVLGLRVT QLEAQLQVGF YDGSCPNAER IVAEEVVKAL VTHPDLPADL LRLHFHDCFV RGCDGSVLLD STPGSTAEKD SPINGSLEGY DVVDNAKTRL EAACPGIVSC  ADIVAFAARD SVKLSKGIPY DVPAGRRDGR VSLSSETFTN LPAPTLNLAQ LTENFASKGL TQEDMVTLSG AHTIGEARCS SITGRLYDFN STGKADPSLD PAYAARLKKK CPPDSVNSNR 
GVDMDPPSPT IIDSSYYRNL LINRGLFTSD QTLMSSPVTA SQVLRNAVND SLFRENFAAA MVKMGQVEVL TGASGEIRKK CNVIN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). Incorrect prediction from Phytozome (PS is missing).
Promoter
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Send to cis Analysis
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GACCACATAG TAACTGTATT CGGAGCTGAA GCCACTGGCA ACAGTAATTT TTCCGCACCA CAGAAGCTCG TCGGACTTGT GTACTGGACT CAGAAGTAGA CCCCGTTTCA CATCCCAAGA  GCCAAATAGC GGTTCAGAGC CGGAAATTAG TAAGCTCTGT CCCCACTGCG TATAGTAAGG TATCTTAAAG ACCAAGGTTA CGGTCCGCAA TGTACTTCTT AATGGAGGTA GTCCTGAGGT  CACCATCGTT CTCTAATAGG ACCAAACCGG ATTACGTCCG CTGCGGTACA GAAAACATGC CAGAAGTCCA TGAAATATTT AAACTGATTG CGATCATTTA CGGGAAAATC GATCACCGAA  AGTAGAGAAA ATCCGCAGAA CCAGATATTG AATCTAATCT GTATTTGCAT GAAGACATGA TCCAAGAAAA GTGAATGTCA CACGAGGCAA GAATATCTTA ATATACTGAG ACCTACATTC  GATTTTCGCC GAAAAACGCA AAAAGGCCTA AGAGACAGCA GCCATACCTC ACTTCGCGGA TGCAAAAAAC CAACTCAGAG CCTGCTAAAC TGATAGATGA GGATAATAAG ATCCTGCCAG  CGATCGAACG AAGGCAGGGA ATCCCTCTGC ATCCCTGTTC TCAGATAAAA CACCATCGAC CGAGAGAAAT CCCATTCCCA CCGTCACAAT CTTCTCATCC GGTGCCGTGT TCGCCTGGAT  TTGATCAGTG GAAGAGTTCG ATTGGACCGT CCTTCGATTG TCCAGCTCCC TCTCTCTCTC TCnnnnnnnn nnnnnnnnnn nnCTACCTCC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC  TCTCTCTCTC TTTCTCTATC TCTGCATCCC GACCATGCAT CCTCACTCTC TCTCCGCCTT TGTTTCGTCG CCATTCTCGG ATGTTGAGTT ATTTCAGTAA ACCCCCTCTG ACTCTTTTCA  TTTTCTAAAT ACCATCGTTC CCGTAATTTT GTTAACCCGA ATTTGCACAT AAGGCCCCAA CGTCCGTCCT AATGATGACG AAAACGTTAT GATTGATTCT AATAATGGAA GCGTCGTCGA  GGAAAGGATA AATAGATGCT GAAATTAAAA TTGGAAAATG AAGGTTTATA AAATATTTAA AAAATAATTT ATGAGTTTAT ATGCAAAAAA TGTTCTCCAC AGGTGGCAAC CGGGATCCGT  ATCGCCCGAA AGTGTCGGAA TCGGGGGCCA AAGGGCCCAT ACACGTGGCG CCCCTTTACG CGAGTCACGG GCTCCGAGAG TGCGACGCGA CGTGAAATCT AGACCGTCCA GATCAGTGGA  TGGATCGGTC CCCAAGATGT AGTAGTAATG GGCTCGCGGA GGCATAATGG GCCAAGAGAG TCGAGGCCCG CCCAATTATA CCACTTGAGA ATTACCAATT TGCCCCTTCC AGATGGATAT  AAAACCAAGT ATCCAGCCGT TTACTCAACC ATGGTAATTA CTGATCAAAA ATATTTTTTA AATAAGCGAA TTTATTTCTC TTTGATAATT TTACCCCCAG GTAGAACTAA AAACCCGCAT  TGACCAGGGA TTCTATCGAA AGCCACACAC TCGTGCCACG TGCCGGCTTC TGCGGATCGT TGACTTTTGG TCGATCGGTT TCAGATTCCT CCTCGACGAG CTGGGAGTCT CCCACCACAG  TGACCTCCGT TGGTCAAGCC CATGCATGGC GGCGATGCAC TGCCTTCCTG GGGAGGCACC CATTTGACTT AAAATAGACT AGGAAGACGT TAGTAGCGCA CAGCTAAGGG CTCTTAGCTT  AAAAGAAAAA AATGGCGGTA GATGAGTTCT GGTCAAAGCG GCGTTAAATA AGGAGGAAAA ATCACGCCTT TAAAATGGAG GGACGGCCCC TCCTTGCAGC GCGCAACCGA AGCCCTGAGA 
ACTCTGTAGA GTTACTCTAC AGATTTCAAG CCGCGTGGGT TGGCGTGTGG TGAGGCTGAT TCTCTGTCTA GGAAGGAAAA 

Retrieve as FASTA  
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGTTTTA GAGAGACGGG GGCGCTGCTG CTGACGCTTG TACTGGGCTT GCGTGTGACC CAGCTTGAGG CTCAGCTTCA AGTAGGGTTC TACGATGGTT CCTGCCCTAA CGCTGAGAGA  ATCGTTGCAG AGGAGGTGGT TAAGGCGCTG GTAACGCATC CCGATCTGCC TGCTGATCTG CTGAGGCTGC ATTTCCACGA CTGCTTCGTC AGGGTAATTT TTCCCCCTCA AACTCCGCAC  AAAGCTTATT ATTAACGATG GAGCCTGCAG GGGAAGCGTT TAATGGCTCA TTTTTTCTGA GTTTGACGCT CTCTGGGGGC CTTGCTCTTC CAAAGGGTTG CGATGGATCG GTCCTCCTCG  ACTCAACTCC GGGCAGCACC GCGGAGAAGG ACTCGCCAAT CAACGGCAGC CTTGAAGGCT ACGATGTCGT CGATAACGCT AAAACCAGGC TGGAGGCAGC TTGCCCGGGG ATCGTCTCGT  GTGCCGACAT CGTCGCCTTC GCCGCCAGAG ACAGCGTTAA ACTGGTAACC CACCCTTTTG AGCGGACGAT TCCTGAACCG TTCGCTCACT GCTCGGCCTG TTCTTCAACT GCTTGAGGTG  ATCAAGTTCT CACACCATCT TGGGCAGAGC AAGGGCATTC CCTACGATGT TCCAGCCGGA AGAAGGGACG GCAGGGTTTC CTTGAGCTCG GAGACGTTCA CAAATTTGCC TGCACCCACC  CTCAACCTCG CTCAGCTCAC TGAGAATTTC GCCAGCAAGG GCCTGACCCA GGAGGACATG GTCACACTCT CCGGTGCGTT TTGGATTCAG ATCTCGCTGC GGAAGTTATC TCCTCCAGAA  CTAAATTTTG CCATCCTCAC CGAGGCCTTT GTTTTGCATA ATCAGGTGCG CATACGATCG GCGAGGCCCG CTGCTCCTCC ATCACTGGCA GGCTTTACGA CTTCAACTCC ACCGGGAAGG  CTGACCCGAG CTTGGATCCA GCCTATGCGG CCAGACTGAA GAAAAAGTGC CCGCCAGACA GCGTTAATAG CAACCGGGGA GTGGATATGG ACCCTCCCAG TCCCACCATT ATCGACTCGA  GCTACTACAG GAACCTCCTC ATCAACCGCG GGTTGTTCAC GTCCGATCAG ACCCTCATGT CTAGCCCGGT GACGGCTTCG CAGGTGTTGC GGAACGCCGT TAATGACTCA CTCTTCAGGG 
AGAACTTCGC GGCCGCCATG GTGAAAATGG GTCAGGTTGA GGTCCTCACC GGAGCCAGCG GGGAGATCCG CAAGAAATGC AACGTCATTA AC 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGTTTTA GAGAGACGGG GGCGCTGCTG CTGACGCTTG TACTGGGCTT GCGTGTGACC CAGCTTGAGG CTCAGCTTCA AGTAGGGTTC TACGATGGTT CCTGCCCTAA CGCTGAGAGA  ATCGTTGCAG AGGAGGTGGT TAAGGCGCTG GTAACGCATC CCGATCTGCC TGCTGATCTG CTGAGGCTGC ATTTCCACGA CTGCTTCGTC AGGGGTTGCG ATGGATCGGT CCTCCTCGAC  TCAACTCCGG GCAGCACCGC GGAGAAGGAC TCGCCAATCA ACGGCAGCCT TGAAGGCTAC GATGTCGTCG ATAACGCTAA AACCAGGCTG GAGGCAGCTT GCCCGGGGAT CGTCTCGTGT  GCCGACATCG TCGCCTTCGC CGCCAGAGAC AGCGTTAAAC TGAGCAAGGG CATTCCCTAC GATGTTCCAG CCGGAAGAAG GGACGGCAGG GTTTCCTTGA GCTCGGAGAC GTTCACAAAT  TTGCCTGCAC CCACCCTCAA CCTCGCTCAG CTCACTGAGA ATTTCGCCAG CAAGGGCCTG ACCCAGGAGG ACATGGTCAC ACTCTCCGGT GCGCATACGA TCGGCGAGGC CCGCTGCTCC  TCCATCACTG GCAGGCTTTA CGACTTCAAC TCCACCGGGA AGGCTGACCC GAGCTTGGAT CCAGCCTATG CGGCCAGACT GAAGAAAAAG TGCCCGCCAG ACAGCGTTAA TAGCAACCGG  GGAGTGGATA TGGACCCTCC CAGTCCCACC ATTATCGACT CGAGCTACTA CAGGAACCTC CTCATCAACC GCGGGTTGTT CACGTCCGAT CAGACCCTCA TGTCTAGCCC GGTGACGGCT  TCGCAGGTGT TGCGGAACGC CGTTAATGAC TCACTCTTCA GGGAGAACTT CGCGGCCGCC ATGGTGAAAA TGGGTCAGGT TGAGGTCCTC ACCGGAGCCA GCGGGGAGAT CCGCAAGAAA 
TGCAACGTCA TTAAC 

Retrieve as FASTA