Entry information : SpolPrx[P]43 (Spipo1G0079100)
Entry ID 13247
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-17 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2015-06-17 (Christophe Dunand)
Peroxidase information: SpolPrx[P]43 (Spipo1G0079100)
Name (synonym) SpolPrx[P]43 (Spipo1G0079100)
Class Class III peroxidase     [Orthogroup: Prx002]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx[P]43
start..stop
S start..stop
SpolPrx30 293 2e-103 1..174 19..192
SpolPrx12 283 3e-99 1..174 17..190
SpolPrx18 256 5e-87 1..170 152..312
SpolPrx41 218 8e-72 1..173 151..325
Literature and cross-references SpolPrx[P]43 (Spipo1G0079100)
Protein sequence: SpolPrx[P]43 (Spipo1G0079100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   173
PWM (Da):   %s   18868.47  
PI (pH):   %s   9.11
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ISLSSETFAN LPPPSFNLDQ LTQSFARKGL TQEDLVTLSG AHSIGKADCS AFSNRLYNFN STVQTDPSLD PVYAAQLKQK CPQGTTGSSV PMDPPSPQVL DSSYYKGLLE NRGLFTSDQT 
LMSSPATARQ VRANRNNNSL FNKNFVAVMM KMVKLTSSLG P*GEIHLNYR VVNK* 

Retrieve as FASTA  
Remarks Pseudogene from genomic (exon 1 and 2 are missing and stop in frame). Incorect prediction from Phytozome (two short extra exon in 3' due to stop in frame)
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AGGAATATCC TTGAGCTCGG AGACGTTCGC GAACTTGCCT CCACCCTCCT TTAACCTAGA TCAGCTCACT CAGAGTTTCG CTAGAAAGGG CCTGACACAG GAGGACTTGG TCACCCTCTC  TGGTGCGTAC ATATGTGATG CCATCGATCG TCTAGGCCGC TTCCAATGAA CTCATAACCG AAAAATATAT CAAATCCTAA CCAGTCGTCA CTAAGAGATG ATATCCCGTG GTGTTGTATG  TGACCAGGTG CACATTCCAT TGGAAAAGCT GACTGCTCCG CGTTCAGCAA CAGGCTCTAC AATTTTAACT CCACCGTGCA GACGGACCCG AGCCTTGACC CAGTCTATGC AGCCCAGCTG  AAGCAGAAGT GTCCCCAGGG CACCACGGGT TCGAGCGTGC CCATGGACCC TCCCTCTCCC CAGGTCCTCG ATTCCAGCTA CTACAAAGGC CTTCTCGAGA ACCGTGGCCT CTTCACCTCT  GATCAGACGC TCATGTCCAG CCCAGCAACG GCGAGGCAAG TGAGGGCCAA CCGGAACAAC AATTCCCTCT TCAACAAGAA TTTCGTGGCA GTAATGATGA AGATGGTAAA ATTGACATCC 
TCACTAGGAC CGTAGGGCGA GATCCATTTG AACTACAGGG TCGTCAACAA ATGA 

Retrieve as FASTA