Entry information : GhPrx38 (Ghpox5)
Entry ID 13267
Creation 2015-06-22 (Christophe Dunand)
Last sequence changes 2015-06-22 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-05 (Achraf Jemmat)
Peroxidase information: GhPrx38 (Ghpox5)
Name (synonym) GhPrx38 (Ghpox5)
Class Class III peroxidase    [Orthogroup: Prx009]
Taxonomy Eukaryota Viridiplantae Streptophyta Malvaceae Gossypium
Organism Gossypium hirsutum (upland cotton)    [TaxId: 3635 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GhPrx38
start..stop
S start..stop
GrPrx38 640 0 1..323 1..323
EcamPrx23 520 0 27..323 23..319
EgrPrx23 520 0 27..323 23..319
EguPrx23 520 0 27..323 23..319
Literature and cross-references GhPrx38 (Ghpox5)
Literature Mei,W., Qin,Y., Song,W., Li,J. and Zhu,Y. Cotton GhPOX1 encoding plant class III peroxidase may be responsible for the high level of reactive oxygen species production that is related to cotton fiber elongation. J Genet Genomics 36 (3), 141-150 (2009)
Protein ref. GenBank:   ACJ11762.1
mRNA ref. GenBank:   FJ415216.1
Protein sequence: GhPrx38 (Ghpox5)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   323 (294)
PWM (Da):   %s   33847.65 (30678.0) Transmb domain:   %s   i12-34o
PI (pH):   %s   8.33 (7.70) Peptide Signal:   %s   cut: 30 range:30-323
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MASKTCSPSN KLRFLLGMVL FLLMNMATAQ LSSTFYSTTC PRALSTIKSA VNSAVSNEAR MGASLPRLHF HDCFVNGCDG SILLDDTANM TGEKTAVPNS NSARGFEVID TIKSQVESLC  PGVVSCADIV AVAARDSVVA LGGPSWIVLL GRRDSTTASL SAANSNIPAP TLNLSGLITA FSNKGFTAKE MVALSGSHTI GQARCTTFRT RIYNETNIDS TFATSLRANC PSNGGDNSLS 
PLDTTSSTSF DNAYFKNLQG QKGLLHSDQQ LFSGGSTDSQ VNAYSSNLGS FTTDFANAMV KMGNLSPLTG TSGQIRTNCR KAN 

Retrieve as FASTA  
Remarks Complete sequence from cDNA.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTCCA AAACTTGTTC CCCTTCTAAC AAGTTGAGAT TCCTCCTAGG AATGGTTTTA TTTCTTCTTA TGAATATGGC CACTGCCCAG TTGTCCTCTA CCTTCTATTC AACAACATGC  CCTAGAGCAC TTTCCACCAT TAAATCAGCA GTCAACTCTG CTGTGTCCAA TGAAGCTCGC ATGGGGGCTT CTTTGCCTCG TCTTCATTTC CACGATTGCT TTGTCAATGG ATGCGATGGA  TCCATACTGT TGGATGATAC AGCAAATATG ACAGGAGAAA AAACAGCTGT TCCAAACAGC AATTCAGCCA GGGGATTTGA AGTTATTGAT ACCATCAAAT CTCAGGTGGA GAGTTTGTGC  CCTGGTGTTG TTTCTTGTGC TGATATTGTT GCAGTTGCTG CTCGTGATTC TGTTGTTGCT CTTGGAGGGC CTAGTTGGAT AGTTCTTTTG GGTAGAAGAG ATTCAACCAC TGCAAGCTTG  AGTGCTGCTA ATTCCAACAT CCCTGCTCCA ACTTTGAATC TTAGTGGTCT CATCACTGCT TTTTCAAACA AAGGTTTCAC TGCTAAAGAA ATGGTAGCCC TCTCAGGATC TCACACCATC  GGACAAGCCA GGTGTACCAC TTTCCGGACA AGAATCTACA ATGAAACCAA CATCGACTCC ACCTTCGCGA CATCGTTAAG AGCGAACTGC CCAAGCAATG GTGGAGACAA CAGCCTGTCC  CCACTGGATA CCACAAGCTC CACATCATTT GACAATGCAT ATTTCAAGAA TTTGCAGGGG CAGAAAGGGT TATTACACTC TGATCAACAG CTATTTAGTG GGGGTTCCAC AGATTCTCAG  GTTAATGCTT ATAGTTCCAA CTTGGGATCT TTCACCACAG ATTTTGCTAA TGCGATGGTA AAGATGGGAA ACCTTAGCCC ACTCACTGGA ACAAGCGGTC AAATCAGGAC GAACTGCAGG 
AAAGCCAATT GA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTCCA AAACTTGTTC CCCTTCTAAC AAGTTGAGAT TCCTCCTAGG AATGGTTTTA TTTCTTCTTA TGAATATGGC CACTGCCCAG TTGTCCTCTA CCTTCTATTC AACAACATGC  CCTAGAGCAC TTTCCACCAT TAAATCAGCA GTCAACTCTG CTGTGTCCAA TGAAGCTCGC ATGGGGGCTT CTTTGCCTCG TCTTCATTTC CACGATTGCT TTGTCAATGG ATGCGATGGA  TCCATACTGT TGGATGATAC AGCAAATATG ACAGGAGAAA AAACAGCTGT TCCAAACAGC AATTCAGCCA GGGGATTTGA AGTTATTGAT ACCATCAAAT CTCAGGTGGA GAGTTTGTGC  CCTGGTGTTG TTTCTTGTGC TGATATTGTT GCAGTTGCTG CTCGTGATTC TGTTGTTGCT CTTGGAGGGC CTAGTTGGAT AGTTCTTTTG GGTAGAAGAG ATTCAACCAC TGCAAGCTTG  AGTGCTGCTA ATTCCAACAT CCCTGCTCCA ACTTTGAATC TTAGTGGTCT CATCACTGCT TTTTCAAACA AAGGTTTCAC TGCTAAAGAA ATGGTAGCCC TCTCAGGATC TCACACCATC  GGACAAGCCA GGTGTACCAC TTTCCGGACA AGAATCTACA ATGAAACCAA CATCGACTCC ACCTTCGCGA CATCGTTAAG AGCGAACTGC CCAAGCAATG GTGGAGACAA CAGCCTGTCC  CCACTGGATA CCACAAGCTC CACATCATTT GACAATGCAT ATTTCAAGAA TTTGCAGGGG CAGAAAGGGT TATTACACTC TGATCAACAG CTATTTAGTG GGGGTTCCAC AGATTCTCAG  GTTAATGCTT ATAGTTCCAA CTTGGGATCT TTCACCACAG ATTTTGCTAA TGCGATGGTA AAGATGGGAA ACCTTAGCCC ACTCACTGGA ACAAGCGGTC AAATCAGGAC GAACTGCAGG  AAAGCCAATT GAATCACCCC TCCTCCCCCT TTTTTGTTTA TATTCCCCAT TTTGTGTATT TTACTATTTA TCGGAATAAA TGCATAATTT AATGTTGTTC TCGTGAAAAA AAAAAAAAAA 
AAA 

Retrieve as FASTA