Entry information : CroAPx02 (cra_locus_4321_iso_9_len_1239_ver_3 / UOYN-2040619)
Entry ID 13327
Creation 2014-11-19 (Bruno Savelli)
Last sequence changes 2015-07-30 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-07-30 (Christophe Dunand)
Peroxidase information: CroAPx02 (cra_locus_4321_iso_9_len_1239_ver_3 / UOYN-2040619)
Name (synonym) CroAPx02 (cra_locus_4321_iso_9_len_1239_ver_3 / UOYN-2040619)
Class Ascorbate peroxidase    [Orthogroup: APx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroAPx02
start..stop
S start..stop
PtriAPx02 494 1e-180 1..250 1..250
CclAPx05 494 1e-180 1..250 1..250
CsAPx02 491 2e-179 1..250 1..250
NtAPx04-1A 486 2e-177 1..250 1..250
Literature and cross-references CroAPx02 (cra_locus_4321_iso_9_len_1239_ver_3 / UOYN-2040619)
Protein sequence: CroAPx02 (cra_locus_4321_iso_9_len_1239_ver_3 / UOYN-2040619)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   251
PWM (Da):   %s   27606.04  
PI (pH):   %s   5.79
Sequence
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Send to Peroxiscan
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MGKCYPKVSE EYQKAVEKCK RKLRGLIAEK HCAPLILRLA WHSAGTYDVK TKTGGPFGTI KHPDELAHEA NNGLDIAVRL LEPIKQQFPI LSYADFYQLA GIVAVEVTGG PEIPFHPGRP  DKDEPPPEGR LPDATKGSDH LRDIFGHMGL SDKDIVALSG GHTLGRCHKE RSGFEGAWTN NPLIFDNSYF KELLSGEKEG LIQLPSDKAL LEDPVFRPLV EKYAADEDAF FADYAEAHLK 
LSELGFADAE * 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq. Frame shift for medicinalplantgenomics.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGGAAGT GCTATCCGAA AGTGAGTGAG GAGTATCAAA AGGCAGTTGA GAAATGCAAG AGGAAGCTCA GAGGACTCAT TGCTGAGAAG CATTGTGCTC CTTTGATTCT GCGATTGGCA  TGGCATTCAG CTGGGACTTA TGATGTGAAA ACCAAAACCG GAGGACCGTT TGGGACGATT AAGCACCCAG ATGAACTTGC TCATGAAGCT AACAATGGCC TTGATATTGC TGTCAGACTT  CTAGAGCCAA TCAAGCAGCA ATTTCCAATC CTTTCTTATG CTGATTTCTA TCAGTTGGCT GGAATTGTCG CTGTTGAAGT GACCGGAGGC CCAGAAATTC CTTTTCATCC TGGGAGACCG  GACAAGGATG AACCTCCTCC AGAAGGCCGC TTACCTGATG CCACTAAAGG TTCTGATCAC CTGAGGGACA TTTTTGGGCA CATGGGGCTG AGCGACAAAG ATATTGTTGC TCTTTCCGGT  GGTCACACAC TGGGACGGTG CCACAAGGAA CGGTCTGGAT TTGAGGGAGC TTGGACAAAC AATCCTCTCA TCTTTGATAA CTCTTATTTC AAAGAACTTC TAAGTGGAGA GAAAGAAGGT  CTTATTCAGC TTCCATCTGA CAAAGCACTT CTGGAAGACC CAGTTTTTCG CCCTCTGGTT GAGAAATATG CTGCGGATGA GGATGCCTTC TTTGCAGACT ATGCTGAAGC TCATTTGAAA 
CTCTCTGAAC TCGGATTCGC GGATGCTGAG TAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CGGCCGGGGG ATCGCCCGCC TGCTAGAACT TTCTGGTCTT CCACTTAGCT TTTTATATGG AGTAGTGAGT GGGTTCGTTC TGAAGGCACA CGACAACCTT GACGTGATTC CACTATCTTC  CTCTCATCGA TTGAATTTTC TGCGATCTTC ACCGGCGGTT CCGCTCTACA GAATTGCACA GGCATGGGGA AGTGCTATCC GAAAGTGAGT GAGGAGTATC AAAAGGCAGT TGAGAAATGC  AAGAGGAAGC TCAGAGGACT CATTGCTGAG AAGCATTGTG CTCCTTTGAT TCTGCGATTG GCATGGCATT CAGCTGGGAC TTATGATGTG AAAACCAAAA CCGGAGGACC GTTTGGGACG  ATTAAGCACC CAGATGAACT TGCTCATGAA GCTAACAATG GCCTTGATAT TGCTGTCAGA CTTCTAGAGC CAATCAAGCA GCAATTTCCA ATCCTTTCTT ATGCTGATTT CTATCAGTTG  GCTGGAATTG TCGCTGTTGA AGTGACCGGA GGCCCAGAAA TTCCTTTTCA TCCTGGGAGA CCGGACAAGG ATGAACCTCC TCCAGAAGGC CGCTTACCTG ATGCCACTAA AGGTTCTGAT  CACCTGAGGG ACATTTTTGG GCACATGGGG CTGAGCGACA AAGATATTGT TGCTCTTTCC GGTGGTCACA CACTGGGACG GTGCCACAAG GAACGGTCTG GATTTGAGGG AGCTTGGACA  AACAATCCTC TCATCTTTGA TAACTCTTAT TTCAAAGAAC TTCTAAGTGG AGAGAAAGAA GGTCTTATTC AGCTTCCATC TGACAAAGCA CTTCTGGAAG ACCCAGTTTT TCGCCCTCTG  GTTGAGAAAT ATGCTGCGGA TGAGGATGCC TTCTTTGCAG ACTATGCTGA AGCTCATTTG AAACTCTCTG AACTCGGATT CGCGGATGCT GAGTAAGGTC CTACCACAAG AGACTGGCTT  TGGCGACATT TGGTGACCTC CTTATTTGCT TCATGTTGGC ACCTTTTAGT CCCTGGTATT TGTTGGTTTG TATATGTTGA AACTCTTGAG TACAAAGTAT ATCAATTGTC TCATTGCTTG  TGATTTGTGA TCTGTGTGCT ATTATGCCTA TGTAATGTAA TCTTCATGAA CTGCTAGAAT TGTTCCATAA AAGAGCAGAT GCATCTTTCT GGTTACAAAT AATAATACAA AAATATATTT 
ATTCCAAGTT ACACCTTATG GTTATATTGA CCTTTC 

Retrieve as FASTA