Entry information : CroAPx-R01 (cra_locus_4863_iso_9_len_1506_ver_3)
Entry ID 13328
Creation 2015-07-30 (Christophe Dunand)
Last sequence changes 2015-07-30 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-07-30 (Christophe Dunand)
Peroxidase information: CroAPx-R01 (cra_locus_4863_iso_9_len_1506_ver_3)
Name (synonym) CroAPx-R01 (cra_locus_4863_iso_9_len_1506_ver_3)
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroAPx-R01
start..stop
S start..stop
VvAPx-R 397 3e-141 1..229 102..330
GmAPx-R 379 3e-134 1..229 91..319
HaAPx-R 377 1e-133 1..226 96..321
LeAPx-R 376 5e-133 1..226 97..322
Literature and cross-references CroAPx-R01 (cra_locus_4863_iso_9_len_1506_ver_3)
Protein sequence: CroAPx-R01 (cra_locus_4863_iso_9_len_1506_ver_3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   229
PWM (Da):   %s   24762.82  
PI (pH):   %s   5.88
Sequence
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Send to Peroxiscan
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MKEEIQKALS KGKAAGVLRL VFHDAGTFDI NDKTGGMNGS IVLELGRPEN KGLKKSVKIL EKAKSLIDII QPVSWADMIA VAGAEAVSLC GGPKIVVQLG RIDSTVPDPE GKLPEESLDV 
PALKQCFQNK GFSTQELVAL SGAHTIGSKG FGDPFVFDNS YFKILLEKPW LSSAGMSAMV GLPSDRALVD DDECKRWIVK YADDQNLFFE DFKNAYVKLV NSGARWTNI 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAAGGAAG AGATCCAGAA GGCATTATCC AAAGGGAAAG CTGCAGGTGT ACTTCGTCTG GTTTTCCATG ATGCAGGAAC TTTTGACATT AATGACAAAA CAGGTGGTAT GAACGGATCC  ATTGTTCTTG AACTTGGACG ACCAGAAAAT AAAGGTCTCA AGAAATCTGT GAAGATTCTC GAGAAGGCAA AGAGTCTAAT TGATATAATC CAACCAGTTT CATGGGCCGA TATGATAGCT  GTTGCTGGGG CAGAAGCTGT TTCACTATGT GGTGGACCCA AAATAGTGGT TCAGTTGGGG AGAATAGATT CAACGGTTCC TGATCCTGAA GGGAAACTAC CTGAAGAATC ACTTGATGTC  CCTGCTCTTA AGCAGTGTTT TCAAAATAAA GGCTTCTCCA CCCAAGAACT TGTAGCACTG TCTGGAGCTC ATACCATTGG AAGCAAAGGT TTCGGAGATC CTTTTGTTTT TGATAATTCA  TACTTCAAAA TTCTGTTGGA GAAACCATGG TTGTCTTCAG CTGGTATGTC TGCTATGGTT GGTCTTCCTT CAGACCGAGC TCTTGTCGAT GATGACGAAT GCAAAAGGTG GATCGTGAAG 
TATGCTGATG ACCAAAATTT GTTCTTTGAA GACTTTAAGA ATGCGTATGT CAAACTTGTA AATAGTGGTG CAAGGTGGAC AAATATTTGA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GTTGGTTGTG TTGCTAATGC TGCCGAGTAA GTAAAATTTT AGGAGAGTTT CACTTTCTTA CCTTTTTTTG AGTTTGAAAT TCCATTATTG AAAGATAAGT TTGCCTCTGG ATGGATAAAG  ATTGAAACTT TTTGGAGTTG TTGAAGGGCT CTGCAAAATT ATTTCACTAT ATTTCAATGA GCTAGGATAT TCCTAAATGA ATAGATGAAT TGTGCCATAT GGAGGTATGC CATGTACCAC  TTTCTGTTTC CCAATACTGT ATTTTGAAGC TAAATTGGTA TGTATCCTAC TTGGTGATTC AAATCAAAGT TTGGGTGCCA GTGCAATATC TTACATGAAG GAAGAGATCC AGAAGGCATT  ATCCAAAGGG AAAGCTGCAG GTGTACTTCG TCTGGTTTTC CATGATGCAG GAACTTTTGA CATTAATGAC AAAACAGGTG GTATGAACGG ATCCATTGTT CTTGAACTTG GACGACCAGA  AAATAAAGGT CTCAAGAAAT CTGTGAAGAT TCTCGAGAAG GCAAAGAGTC TAATTGATAT AATCCAACCA GTTTCATGGG CCGATATGAT AGCTGTTGCT GGGGCAGAAG CTGTTTCACT  ATGTGGTGGA CCCAAAATAG TGGTTCAGTT GGGGAGAATA GATTCAACGG TTCCTGATCC TGAAGGGAAA CTACCTGAAG AATCACTTGA TGTCCCTGCT CTTAAGCAGT GTTTTCAAAA  TAAAGGCTTC TCCACCCAAG AACTTGTAGC ACTGTCTGGA GCTCATACCA TTGGAAGCAA AGGTTTCGGA GATCCTTTTG TTTTTGATAA TTCATACTTC AAAATTCTGT TGGAGAAACC  ATGGTTGTCT TCAGCTGGTA TGTCTGCTAT GGTTGGTCTT CCTTCAGACC GAGCTCTTGT CGATGATGAC GAATGCAAAA GGTGGATCGT GAAGTATGCT GATGACCAAA ATTTGTTCTT  TGAAGACTTT AAGAATGCGT ATGTCAAACT TGTAAATAGT GGTGCAAGGT GGACAAATAT TTGAATCATA CAAAAAGGAC AAATCATAGG TTCTCAGATT GGTAAAGCAA GCTAAACTCG  TAAAGTATAT TTCTTGGTGA TTCAAAAGGC TAAACAAAAA CACAGAAGAG AATTACTCGG CTGAAACTAG GCAAATGCTC TCTCTTCCCT CAATCAGGTG TAAGGCACCT GTCTGCAGAC  TTGATATTTG GGTGTGGCTC TTCATAGTCC TCTACTTATC CATTTCCCAG TCGACAATGG TGGACAGCAA ACAGTGGTGA AAGAAGCTAC CAACTTCCTT CATGCCTGGA CACAGACACA  TTTGAGTTCT CCAGTAATAT GTAAGTATTT CTTTTTAGAT TTATGTATCG TTCTTTGTAA ACCTATAAAC TACACTGATA CTCATTGATC TCTAGTAGTA AGACTTGTTT TTTGTATGTG 
CCTCATTGCC TGATGAAGAA TGTTCAAATT TGTGTATTTG GATTGGTTCT GTGAATGCAA AACGAG 

Retrieve as FASTA