Entry information : PsiPrx06
Entry ID 13443
Creation 2014-11-19 (Bruno Savelli)
Last sequence changes 2015-08-13 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-02-09 (Achraf Jemmat)
Peroxidase information: PsiPrx06
Name PsiPrx06
Class Class III peroxidase    [Orthogroup: Prx084]
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Picea
Organism Picea sitchensis (Sitka spruce)    [TaxId: 3332 ]
Cellular localisation N/D
Tissue types Barks
Phloem
Xylem
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PsiPrx06
start..stop
S start..stop
PabPrx17 697 0 1..341 1..341
PabPrx16 697 0 1..341 1..341
PabPrx146 662 0 1..321 1..321
PabPrx01 615 0 1..341 1..340
Literature and cross-references PsiPrx06
Literature Ralph,S.G. et al., A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis). BMC Genomics 9, 484 (2008)
Protein ref. GenBank:   ABK21983.1
mRNA ref. GenBank:   EF082628.1
EST ref. GenBank:   DR502353.1 [5' end]   DR494731.1 [3' end]
Protein sequence: PsiPrx06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   341 (308)
PWM (Da):   %s   36857.76 (33267.8) Transmb domain:   %s   i9-31o
PI (pH):   %s   8.97 (8.97) Peptide Signal:   %s   cut: 34 range:34-341
Sequence
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Send to Peroxiscan
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MAQIKHSPGL TLQFLSVLIT GLALMLWIQT VDAQSCNGLS HHFYYKSCPK AQAIIKSVVE DAVRKEARMA ASLLRLHFHD CFVKGCDGSI LLDDTSSFTG EKTANPNKNS VRGFGVVDQI  KCELEKACPG VVSCADILAV AARDSVGFSG GPFWKVLLGR RDSRSASKSG ANNDIPGPNS THQTLETKFK RQGLNVVDLV ALSGAHTIGL ARCSSFKARL YNQTVNGKPD PTLDTTYLKQ 
LRAVCPQTGT DDNQTTPLDP VTPIKFDIDY YDNVVAGKGL LASDEILYST KGSRTVGLVE SYSTSTHAFF KQFAASMIKM GNINPLTGSH GEIRKNCRRM N 

Retrieve as FASTA  
Remarks Complete sequence from mRNA and 6 ESTs.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCACAGA TCAAACATAG TCCGGGCCTT ACACTGCAGT TTCTGTCTGT GCTGATCACG GGACTGGCAT TGATGCTATG GATCCAGACA GTGGATGCTC AGAGCTGTAA TGGGCTGAGT  CATCATTTTT ATTACAAATC CTGTCCCAAG GCCCAGGCTA TCATTAAATC TGTAGTAGAA GATGCTGTCA GAAAGGAAGC AAGAATGGCT GCTTCCCTGC TTCGTCTGCA TTTTCATGAC  TGTTTTGTTA AGGGCTGCGA CGGTTCAATT CTGCTTGATG ACACTTCTAG CTTCACGGGG GAGAAGACAG CAAATCCTAA CAAGAATTCT GTAAGAGGCT TTGGAGTAGT GGATCAGATC  AAATGCGAAC TGGAGAAAGC ATGTCCCGGG GTGGTCTCAT GTGCTGACAT TCTTGCTGTG GCAGCCCGTG ATTCAGTTGG CTTTAGTGGA GGGCCGTTTT GGAAGGTTCT ACTGGGTAGG  AGGGATTCAA GAAGTGCAAG CAAGAGCGGC GCAAACAACG ACATTCCTGG GCCCAACTCA ACCCATCAGA CTTTGGAAAC CAAATTCAAA CGCCAAGGTC TCAATGTCGT CGACCTGGTT  GCTCTATCAG GCGCCCATAC GATAGGTTTA GCGCGATGCT CAAGCTTCAA GGCGAGGCTG TACAATCAGA CTGTAAATGG GAAGCCTGAC CCTACACTTG ACACGACGTA CTTAAAGCAG  CTGAGGGCCG TGTGTCCTCA AACTGGCACC GATGATAATC AAACGACGCC ATTGGATCCG GTCACTCCTA TAAAATTCGA CATAGACTAC TACGATAACG TGGTGGCGGG AAAGGGGCTG  CTGGCGTCAG ATGAGATTCT GTATTCCACC AAAGGAAGTA GAACAGTGGG TTTAGTGGAG TCCTACAGCA CCAGCACGCA TGCATTCTTC AAGCAATTCG CTGCATCAAT GATAAAGATG 
GGCAACATCA ATCCTCTCAC CGGGTCTCAC GGTGAAATTA GAAAGAACTG TCGTAGAATG AACTGA 

Retrieve as FASTA