Entry information : CtoAPx-CcP01
Entry ID 13471
Creation 2015-10-28 (Christophe Dunand)
Last sequence changes 2015-10-28 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-02-02 (Achraf Jemmat)
Peroxidase information: CtoAPx-CcP01
Name CtoAPx-CcP01
Class Hybrid Ascorbate-Cytochrome C peroxidase    [Orthogroup: APx-CcP001]
Taxonomy Haptophyceae (prymnesiophytes); Prymnesiales; Prymnesiales; Prymnesiales
Organism Chrysochromulina tobin (sp. CCMP291)    [TaxId: 1460289 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CtoAPx-CcP01
start..stop
S start..stop
OCgrAPx-CcP03 234 1e-73 66..320 4..249
EhuxAPx-CcP03 223 1e-68 58..324 25..284
OCgrCcP05 220 4e-68 73..320 1..239
TpsAPx-CcP01 219 1e-67 59..324 7..261
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 35822..37639 1818  
complement(join(35822..37639))


exon

Literature and cross-references CtoAPx-CcP01
Literature Hovde,B.T. et al., Direct Submission. Submitted (29-DEC-2014) Genome Sciences, University of Washington, 3720 15th Ave NE, Seattle, WA 98195, USA.
Protein ref. GenBank:   KOO24199.1 UniProtKB:   A0A0M0JC90
DNA ref. GenBank:   JWZX01003115.1 (37639..35822)
Protein sequence: CtoAPx-CcP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   605
PWM (Da):   %s   65772.22  
PI (pH):   %s   5.89
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPSFDAVGEY LEINQLEAVL SDAVAICVEE ERPQPLAAIA DMLYERAAAL AVAWDYGQLT ADVRGLIERE KCGPVFVQLA FADAATYSAA LGGGGPNAAL RFADRGEGAF PCNAFLAKRA  VPLLEPIKAQ YPNISRADLW AHAANVAIEA LGGPSILSRF GRRDAATSAD SVPSAAGRLP DDLASGAEAS PSEHMADHLR VIFHRKGFTD REIVALCGRH TLGEYEPPNG APGGGPWTEH  PNRFDNSYYV ELLSKKYEPS ACGSAGVLLR SSDGSTIMLP TDHALLRDPK LRVYAEKYAS DSKSFFADFA AAWEKLLELG CTRLAPHPAS LTYASSCVVP CEWLELPLRT RRDHTHDTAV  YGFGLPEPTQ TLRLPACACL LVRAPARGKE GRDAMRAYFP TSDPGLQGTF ELMVRRGSEP PDEVAAWLHE LPIGSKVAFR HPALCLKEQY PFEGKERFNM LAGGMGLAPM YQILWKMLFI  PADERKAVLI YHSRTTADIL LRRELDEWAR ALPHRLTVVH VVGDAPDAAP PEGWKTTDTY VAESGEVDKA KLSKYAFAPS KETLCFICGP PALYTALCGP REERALRQGT VLDQLGYTSS 
MIAKL 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCGTCCT TCGATGCCGT GGGCGAGTAC CTGGAGATCA ATCAGCTCGA GGCCGTGCTC TCTGACGCGG TCGCCATCTG CGTAGAGGAG GAGCGGCCGC AACCACTCGC AGCCATCGCC  GACATGCTGT ACGAGCGCGC CGCTGCTCTT GCGGTCGCCT GGGACTATGG GCAGCTCACC GCGGACGTGC GCGGCCTCAT CGAGCGTGAA AAGTGCGGGC CAGTCTTTGT GCAGCTTGCC  TTTGCCGATG CCGCCACGTA CAGCGCAGCC CTTGGTGGAG GTGGTCCCAA TGCTGCCTTG CGCTTTGCCG ACAGGGGCGA GGGCGCCTTT CCTTGCAACG CCTTTCTGGC GAAGCGCGCG  GTGCCGCTCC TCGAGCCGAT CAAGGCGCAG TACCCGAACA TCTCGCGCGC TGATCTGTGG GCCCACGCCG CAAACGTGGC CATCGAGGCC CTCGGTGGGC CGAGCATCCT GAGCCGATTC  GGGCGGCGGG ACGCGGCGAC GTCGGCTGAC TCTGTGCCAT CGGCCGCCGG CCGGCTGCCC GACGACCTCG CGAGCGGTGC CGAGGCGTCG CCGTCGGAGC ACATGGCCGA CCACCTGCGC  GTCATCTTCC ACAGGAAGGG CTTCACCGAC CGTGAGATCG TCGCCCTGTG TGGCCGTCAC ACCCTCGGGG AATATGAGCC ACCCAACGGG GCGCCAGGTG GCGGCCCTTG GACGGAGCAT  CCGAACCGCT TCGATAACTC GTACTACGTC GAGTTGCTCT CGAAGAAATA CGAGCCGTCG GCATGTGGCT CAGCGGGGGT GCTCCTGCGT AGCTCTGACG GGAGCACGAT CATGCTGCCC  ACGGACCACG CGTTGCTTCG CGACCCGAAG CTGCGGGTGT ATGCAGAAAA GTACGCGAGC GACTCCAAGA GCTTCTTTGC CGACTTTGCG GCTGCGTGGG AAAAGCTGCT CGAGCTCGGA  TGCACGCGGC TCGCGCCGCA CCCGGCCTCG CTCACGTACG CCTCCTCGTG CGTCGTGCCG TGCGAATGGC TCGAGCTGCC GTTACGAACC CGGCGCGACC ACACGCACGA CACCGCAGTG  TACGGCTTTG GCCTCCCGGA GCCGACGCAG ACGCTGCGCC TGCCCGCCTG CGCGTGCCTC CTCGTGCGCG CGCCCGCCAG GGGTAAGGAA GGGCGCGACG CCATGCGCGC CTACTTCCCC  ACATCCGACC CCGGCCTGCA AGGCACGTTC GAACTCATGG TGAGACGGGG CTCCGAGCCC CCCGATGAGG TTGCCGCGTG GCTGCATGAA CTCCCTATTG GCTCGAAAGT CGCGTTCCGT  CACCCGGCCC TCTGCCTCAA GGAGCAGTAC CCTTTCGAGG GCAAGGAGCG CTTCAACATG CTCGCGGGCG GCATGGGCCT CGCCCCCATG TACCAAATCC TATGGAAGAT GCTCTTCATC  CCGGCGGACG AGCGCAAGGC GGTGCTCATC TACCACAGCC GCACGACCGC CGACATCCTG CTGCGGCGCG AGCTCGACGA GTGGGCGCGC GCGCTGCCGC ACCGGCTGAC CGTCGTGCAC  GTGGTGGGCG ACGCGCCCGA CGCGGCGCCG CCCGAAGGGT GGAAGACCAC GGACACATAC GTGGCCGAGA GCGGAGAGGT TGACAAAGCC AAGCTGAGCA AGTATGCCTT CGCGCCGTCC  AAGGAGACGC TCTGCTTCAT CTGCGGGCCG CCCGCGCTCT ACACGGCGCT GTGTGGGCCA CGAGAGGAAC GCGCGCTGCG CCAAGGCACG GTGCTCGACC AGCTGGGCTA CACAAGCAGC 
ATGATCGCCA AGCTCTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCGTCCT TCGATGCCGT GGGCGAGTAC CTGGAGATCA ATCAGCTCGA GGCCGTGCTC TCTGACGCGG TCGCCATCTG CGTAGAGGAG GAGCGGCCGC AACCACTCGC AGCCATCGCC  GACATGCTGT ACGAGCGCGC CGCTGCTCTT GCGGTCGCCT GGGACTATGG GCAGCTCACC GCGGACGTGC GCGGCCTCAT CGAGCGTGAA AAGTGCGGGC CAGTCTTTGT GCAGCTTGCC  TTTGCCGATG CCGCCACGTA CAGCGCAGCC CTTGGTGGAG GTGGTCCCAA TGCTGCCTTG CGCTTTGCCG ACAGGGGCGA GGGCGCCTTT CCTTGCAACG CCTTTCTGGC GAAGCGCGCG  GTGCCGCTCC TCGAGCCGAT CAAGGCGCAG TACCCGAACA TCTCGCGCGC TGATCTGTGG GCCCACGCCG CAAACGTGGC CATCGAGGCC CTCGGTGGGC CGAGCATCCT GAGCCGATTC  GGGCGGCGGG ACGCGGCGAC GTCGGCTGAC TCTGTGCCAT CGGCCGCCGG CCGGCTGCCC GACGACCTCG CGAGCGGTGC CGAGGCGTCG CCGTCGGAGC ACATGGCCGA CCACCTGCGC  GTCATCTTCC ACAGGAAGGG CTTCACCGAC CGTGAGATCG TCGCCCTGTG TGGCCGTCAC ACCCTCGGGG AATATGAGCC ACCCAACGGG GCGCCAGGTG GCGGCCCTTG GACGGAGCAT  CCGAACCGCT TCGATAACTC GTACTACGTC GAGTTGCTCT CGAAGAAATA CGAGCCGTCG GCATGTGGCT CAGCGGGGGT GCTCCTGCGT AGCTCTGACG GGAGCACGAT CATGCTGCCC  ACGGACCACG CGTTGCTTCG CGACCCGAAG CTGCGGGTGT ATGCAGAAAA GTACGCGAGC GACTCCAAGA GCTTCTTTGC CGACTTTGCG GCTGCGTGGG AAAAGCTGCT CGAGCTCGGA  TGCACGCGGC TCGCGCCGCA CCCGGCCTCG CTCACGTACG CCTCCTCGTG CGTCGTGCCG TGCGAATGGC TCGAGCTGCC GTTACGAACC CGGCGCGACC ACACGCACGA CACCGCAGTG  TACGGCTTTG GCCTCCCGGA GCCGACGCAG ACGCTGCGCC TGCCCGCCTG CGCGTGCCTC CTCGTGCGCG CGCCCGCCAG GGGTAAGGAA GGGCGCGACG CCATGCGCGC CTACTTCCCC  ACATCCGACC CCGGCCTGCA AGGCACGTTC GAACTCATGG TGAGACGGGG CTCCGAGCCC CCCGATGAGG TTGCCGCGTG GCTGCATGAA CTCCCTATTG GCTCGAAAGT CGCGTTCCGT  CACCCGGCCC TCTGCCTCAA GGAGCAGTAC CCTTTCGAGG GCAAGGAGCG CTTCAACATG CTCGCGGGCG GCATGGGCCT CGCCCCCATG TACCAAATCC TATGGAAGAT GCTCTTCATC  CCGGCGGACG AGCGCAAGGC GGTGCTCATC TACCACAGCC GCACGACCGC CGACATCCTG CTGCGGCGCG AGCTCGACGA GTGGGCGCGC GCGCTGCCGC ACCGGCTGAC CGTCGTGCAC  GTGGTGGGCG ACGCGCCCGA CGCGGCGCCG CCCGAAGGGT GGAAGACCAC GGACACATAC GTGGCCGAGA GCGGAGAGGT TGACAAAGCC AAGCTGAGCA AGTATGCCTT CGCGCCGTCC  AAGGAGACGC TCTGCTTCAT CTGCGGGCCG CCCGCGCTCT ACACGGCGCT GTGTGGGCCA CGAGAGGAAC GCGCGCTGCG CCAAGGCACG GTGCTCGACC AGCTGGGCTA CACAAGCAGC 
ATGATCGCCA AGCTCTGA 

Retrieve as FASTA