Entry information : RfAPx01
Entry ID 13529
Creation 2016-02-26 (Mbadinga)
Last sequence changes 2016-02-27 (Christophe Dunand)
Sequence status partial
Reviewer Mbadinga
Last annotation changes 2016-02-29 (Mbadinga)
Peroxidase information: RfAPx01
Name RfAPx01
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Foraminifera Reticulomyxidae Reticulomyxa
Organism Reticulomyxa filosa    [TaxId: 46433 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RfAPx01
start..stop
S start..stop
BnaAPx01 114 2e-32 1..145 113..234
PmariAPx01 108 7e-30 1..137 170..289
KmAPx01 104 6e-28 1..145 212..336
PmariAPx02 103 9e-28 1..137 202..321
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2878..3120 243 N° 2 2643..2837 195  
complement(join(2643..2837,2878..3120))


exon

Literature and cross-references RfAPx01
Protein ref. GenBank:   ETO07390.1 [3' end]
DNA ref. GenBank:   ASPP01026199.1 (3243..2643) [3' end]
Protein sequence: RfAPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   145
PWM (Da):   %s   16711.64  
PI (pH):   %s   10.24
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GRAFAERSGTVKEGYGPNKATQFTKAPHKPRHDGKEGLGMSGGRSFTVHWLDFDDEYFNFDKVLFLVAKKKKKNKLKIYVSVKDSDKDKLLQLSTDKVLFVDDNFKKYTQLYASDRERWFQDYIKAHQRLAELGSKFNPPNGFYL*

Retrieve as FASTA  
Remarks Partial sequence from genomic (1 intron detected). 5' end is missing.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGTCGTGCTTTTGCGGAGCGCTCTGGAACTGTGAAGGAAGGCTACGGACCCAATAAAGCCACCCAATTTACCAAAGCGCCACACAAACCTAGACACGATGGAAAAGAAGGGCTTGGCATG
TCTGGAGGTCGCAGTTTTACTGTACATTGGCTGGACTTTGATGACGAGTATTTCAACTTTGACAAAGTTTTGTTCCTCGTTGCAAAAAAAAAAAAAAAAAACAAACTCAAAATTTATGTT
AGT
GTTTGTTTGTAATATATGTGATGTGCTTGTTATTTGAAAGGTGAAAGACTCGGACAAAGACAAGTTGTTGCAACTGTCCACCGATAAGGTCTTGTTTGTTGATGACAACTTCAAGAA
ATACACCCAACTTTATGCCAGTGATCGTGAGAGATGGTTCCAAGATTACATTAAGGCACATCAACGACTCGCTGAGTTGGGATCAAAGTTCAATCCTCCTAATGGATTCTATTTGTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGTCGTGCTTTTGCGGAGCGCTCTGGAACTGTGAAGGAAGGCTACGGACCCAATAAAGCCACCCAATTTACCAAAGCGCCACACAAACCTAGACACGATGGAAAAGAAGGGCTTGGCATG
TCTGGAGGTCGCAGTTTTACTGTACATTGGCTGGACTTTGATGACGAGTATTTCAACTTTGACAAAGTTTTGTTCCTCGTTGCAAAAAAAAAAAAAAAAAACAAACTCAAAATTTATGTT
AGT
GTGAAAGACTCGGACAAAGACAAGTTGTTGCAACTGTCCACCGATAAGGTCTTGTTTGTTGATGACAACTTCAAGAAATACACCCAACTTTATGCCAGTGATCGTGAGAGATGGTTC
CAAGATTACATTAAGGCACATCAACGACTCGCTGAGTTGGGATCAAAGTTCAATCCTCCTAATGGATTCTATTTGTAA

Retrieve as FASTA