Entry information : LmexAPx-CcP01
Entry ID 13531
Creation 2016-02-26 (Mbadinga)
Last sequence changes 2016-02-27 (Christophe Dunand)
Sequence status complete
Reviewer Mbadinga
Last annotation changes 2016-02-29 (Mbadinga)
Peroxidase information: LmexAPx-CcP01
Name LmexAPx-CcP01
Class Hybrid Ascorbate-Cytochrome C peroxidase    [Orthogroup: APx-CcP001]
Taxonomy Eukaryota Trypanosomatidae Leishmania
Organism Leishmania mexicana    [TaxId: 5665 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LmexAPx-CcP01
start..stop
S start..stop
LinfAPx-CcP 587 0 1..303 1..303
LdonAPx-CcP01 587 0 1..303 1..303
LmAPx-CcP 577 0 1..303 1..303
LbraAPx-CcP 547 0 1..300 1..302
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 20498..21409 912  
join(20498..21409)


exon

Literature and cross-references LmexAPx-CcP01
Literature Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Genome Res. 21 (12), 2129-2142 (2011)
Protein ref. GenBank:   CBZ30142.1 UniProtKB:   E9B4H3
DNA ref. GenBank:   FR799586.1 (20498..21409)
Protein sequence: LmexAPx-CcP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   304
PWM (Da):   %s   33598.86 Transmb domain:   %s   i12-34o
PI (pH):   %s   7.46
Sequence
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Send to Peroxiscan
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MFGTSRRAKG LFTGIAVGTV ASGAMLVSCA SARVEEPPFD IRALRSDIEN MISDKLELGP SLIRLAWHEA GSYDCFKKDG SPNSASMRFK PECMYAGNKG LEIPRKALEP LKKKYPQISY  ADLWVLAAYV AIEYMGGPEI PFSWGRVDAK DGSVCGPDGR LPDASKMQGH VREVFTRLGF NDQEAVALIG AHTCGECHIK FSGYDGPWTH DKNGFDNSFF TQLLEEDWVL NPKIEKLQLM 
DRATTKLMML PTDVSLLLDP SYRKYVELYA KDNDRFNADF AKAFKKLTEL GTKNLHKAPA SGS* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 33, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTTCGGCA CCTCGCGGCG AGCGAAAGGC CTCTTTACCG GCATCGCTGT CGGCACCGTC GCGAGTGGTG CCATGCTTGT TTCGTGCGCC AGCGCACGCG TGGAGGAACC ACCGTTTGAT  ATCAGGGCTC TCCGCAGCGA CATTGAGAAC ATGATCTCTG ACAAACTGGA ACTGGGACCT TCGCTGATTC GCCTAGCATG GCACGAGGCC GGCTCGTACG ACTGCTTCAA GAAGGACGGC  TCTCCGAACT CAGCGTCGAT GCGCTTCAAA CCGGAGTGCA TGTACGCGGG TAACAAAGGT CTCGAAATCC CTCGCAAGGC GCTGGAGCCT TTGAAGAAGA AGTACCCTCA AATATCTTAC  GCGGATTTGT GGGTGCTCGC CGCCTACGTG GCCATCGAGT ACATGGGTGG TCCCGAGATT CCGTTTTCCT GGGGTCGGGT GGATGCCAAG GACGGCTCTG TGTGTGGACC TGATGGGCGC  CTGCCGGACG CCTCAAAGAT GCAAGGTCAC GTACGCGAAG TGTTCACGCG CCTCGGGTTC AATGACCAGG AGGCAGTGGC GCTCATCGGC GCGCACACAT GCGGTGAATG CCACATCAAG  TTCTCCGGCT ACGATGGACC GTGGACGCAC GACAAGAACG GTTTCGACAA CTCTTTCTTT ACCCAGCTTC TCGAGGAGGA TTGGGTCTTG AATCCCAAGA TTGAGAAGCT GCAGCTGATG  GACCGCGCAA CGACGAAGCT GATGATGCTT CCCACTGACG TTTCCCTCCT CCTCGATCCC TCTTACCGCA AGTACGTGGA GCTGTACGCA AAGGACAACG ACCGCTTCAA CGCAGACTTT 
GCGAAGGCGT TCAAAAAGCT GACCGAGCTC GGCACCAAGA ACCTTCACAA AGCACCCGCG TCGGGGAGCT AA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTTCGGCA CCTCGCGGCG AGCGAAAGGC CTCTTTACCG GCATCGCTGT CGGCACCGTC GCGAGTGGTG CCATGCTTGT TTCGTGCGCC AGCGCACGCG TGGAGGAACC ACCGTTTGAT  ATCAGGGCTC TCCGCAGCGA CATTGAGAAC ATGATCTCTG ACAAACTGGA ACTGGGACCT TCGCTGATTC GCCTAGCATG GCACGAGGCC GGCTCGTACG ACTGCTTCAA GAAGGACGGC  TCTCCGAACT CAGCGTCGAT GCGCTTCAAA CCGGAGTGCA TGTACGCGGG TAACAAAGGT CTCGAAATCC CTCGCAAGGC GCTGGAGCCT TTGAAGAAGA AGTACCCTCA AATATCTTAC  GCGGATTTGT GGGTGCTCGC CGCCTACGTG GCCATCGAGT ACATGGGTGG TCCCGAGATT CCGTTTTCCT GGGGTCGGGT GGATGCCAAG GACGGCTCTG TGTGTGGACC TGATGGGCGC  CTGCCGGACG CCTCAAAGAT GCAAGGTCAC GTACGCGAAG TGTTCACGCG CCTCGGGTTC AATGACCAGG AGGCAGTGGC GCTCATCGGC GCGCACACAT GCGGTGAATG CCACATCAAG  TTCTCCGGCT ACGATGGACC GTGGACGCAC GACAAGAACG GTTTCGACAA CTCTTTCTTT ACCCAGCTTC TCGAGGAGGA TTGGGTCTTG AATCCCAAGA TTGAGAAGCT GCAGCTGATG  GACCGCGCAA CGACGAAGCT GATGATGCTT CCCACTGACG TTTCCCTCCT CCTCGATCCC TCTTACCGCA AGTACGTGGA GCTGTACGCA AAGGACAACG ACCGCTTCAA CGCAGACTTT 
GCGAAGGCGT TCAAAAAGCT GACCGAGCTC GGCACCAAGA ACCTTCACAA AGCACCCGCG TCGGGGAGCT AA 

Retrieve as FASTA