Entry information : ShisAPx01
Entry ID 13533
Creation 2016-02-26 (Mbadinga)
Last sequence changes 2016-02-26 (Mbadinga)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-02-27 (Christophe Dunand)
Peroxidase information: ShisAPx01
Name ShisAPx01
Class Ascorbate peroxidase    [Orthogroup: APx012]
Taxonomy Eukaryota Spirotrichea Oxytrichidae Sterkiella
Organism Sterkiella histriomuscorum    [TaxId: 94289 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ShisAPx01
start..stop
S start..stop
OtriAPx01 432 3e-156 1..208 66..273
SlemAPx01 335 8e-118 1..208 66..275
CochAPx01 166 2e-51 1..174 76..243
CornAPx01 163 4e-51 18..174 71..226
Literature and cross-references ShisAPx01
mRNA ref. GenBank:   GE313985.1
Protein sequence: ShisAPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   209
PWM (Da):   %s   23730.34  
PI (pH):   %s   4.95
Sequence
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Send to Peroxiscan
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MDPFEDIKTD GNHITNMLSY SDLIQLGAYA AVEYTGGPTM VFRMGRKDAE ESDATPEDRL PDNKEGSSGM VNKMRRTGFS TQDIVAIMGS HTLGFAHQDR TGFQGRWTQN PHVFDNTYYK 
EVLLGQKSKF LKTPAEHMLL ENQEMKRFVE MYAQDQNLFF THYADAHVKM SEFGQEEHLL SEFDNQPANK LPQVEGIQIG SFSDPQKY* 

Retrieve as FASTA  
Remarks Complete sequence from mRNA. Specifc codon usage.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGATCCCT TTGAGGACAT CAAGACTGAT GGAAATCACA TCACAAACAT GCTCTCATAT TCAGATTTGA TCTAACTAGG AGCTTACGCT GCTGTTGAAT ACACTGGAGG CCCAACTATG  GTCTTCAGAA TGGGAAGAAA AGATGCTGAA GAAAGCGATG CAACCCCAGA AGACAGATTG CCAGACAATA AAGAGGGCTC TAGCGGCATG GTCAATAAGA TGAGAAGAAC GGGTTTCTCA  ACTTAAGATA TCGTAGCTAT TATGGGTTCA CATACTCTCG GATTCGCTCA CCAAGACAGA ACTGGATTTT AGGGAAGATG GACTTAAAAC CCTCATGTAT TCGACAACAC TTATTACAAG  GAAGTTCTCT TAGGTTAAAA ATCTAAATTC TTGAAGACCC CTGCAGAACA CATGCTCCTT GAAAACCAAG AAATGAAGAG ATTCGTTGAA ATGTACGCTC AAGATTAAAA CTTATTCTTC  ACTCATTACG CAGATGCTCA TGTTAAAATG AGTGAATTCG GTCAAGAAGA ACATTTATTG AGTGAATTCG ACAATCAACC AGCAAATAAA CTTCCTCAAG TTGAAGGCAT TCAAATTGGA 
TCTTTCTCTG ATCCACAAAA ATATTGA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAAGACCAGA GAATAAGGGT CTGCAATTCG CCATGGATCC CTTTGAGGAC ATCAAGACTG ATGGAAATCA CATCACAAAC ATGCTCTCAT ATTCAGATTT GATCTAACTA GGAGCTTACG  CTGCTGTTGA ATACACTGGA GGCCCAACTA TGGTCTTCAG AATGGGAAGA AAAGATGCTG AAGAAAGCGA TGCAACCCCA GAAGACAGAT TGCCAGACAA TAAAGAGGGC TCTAGCGGCA  TGGTCAATAA GATGAGAAGA ACGGGTTTCT CAACTTAAGA TATCGTAGCT ATTATGGGTT CACATACTCT CGGATTCGCT CACCAAGACA GAACTGGATT TTAGGGAAGA TGGACTTAAA  ACCCTCATGT ATTCGACAAC ACTTATTACA AGGAAGTTCT CTTAGGTTAA AAATCTAAAT TCTTGAAGAC CCCTGCAGAA CACATGCTCC TTGAAAACCA AGAAATGAAG AGATTCGTTG  AAATGTACGC TCAAGATTAA AACTTATTCT TCACTCATTA CGCAGATGCT CATGTTAAAA TGAGTGAATT CGGTCAAGAA GAACATTTAT TGAGTGAATT CGACAATCAA CCAGCAAATA  AACTTCCTCA AGTTGAAGGC ATTCAAATTG GATCTTTCTC TGATCCACAA AAATATTGAG AGGGGTTGTC TTGATTTAAA AAAACACTTT GTATAACTTA TGGACGCATT TCAACTAGTA 
TAAATCAAT 

Retrieve as FASTA