Entry information : HaPrxII[P]06 ( HanXRQChr03g0087111)
Entry ID 13662
Creation 2016-05-10 (Christophe Dunand)
Last sequence changes 2016-05-10 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2017-11-23 (Catherine Mathe (Scipio))
Peroxidase information: HaPrxII[P]06 ( HanXRQChr03g0087111)
Name (synonym) HaPrxII[P]06 ( HanXRQChr03g0087111)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus
Organism Helianthus annuus (Sunflower)    [TaxId: 4232 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value HaPrxII[P]06
start..stop
S start..stop
HaPrxII05 188 7e-63 1..121 1..121
HaPrxII02 179 3e-59 1..121 1..121
VvPrxII03 162 1e-52 1..118 1..118
CclPrxII02 158 4e-51 1..118 1..118
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 148724615..148725010 396  
complement(join(148724615..148725010))


exon

Literature and cross-references HaPrxII[P]06 ( HanXRQChr03g0087111)
DNA ref. HanXRQ genome:   HanXRQChr03 (148725010..148724615)
Cluster/Prediction ref. HanXRQ:   HanXRQChr03g0087111
Protein sequence: HaPrxII[P]06 ( HanXRQChr03g0087111)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   132
PWM (Da):   %s   14710.62  
PI (pH):   %s   8.75
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPIKVGDSI LDGSLAHFDE KDEMQQVSVH SLAAGKKVVI FGVHSAFTPT CSMKHVPRLI EKSEELKSKG VEEFLLISVN DPFVMKAWKK SYPETKKCEV LSRRVCNRHP CPWYELDLIC 
KVKVGKGSLS FK 

Retrieve as FASTA  
Remarks Pseudogene from genomic (large 3'end is missing)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCGA TCAAAGTTGG TGACAGCATT CTTGACGGAT CTCTTGCACA CTTCGACGAG AAAGATGAGA TGCAACAGGT CTCGGTTCAC TCTCTCGCCG CCGGCAAGAA AGTCGTCATC  TTTGGTGTCC ACAGTGCCTT CACTCCGACT TGCAGTATGA AGCATGTCCC CAGGTTGATT GAGAAATCTG AAGAACTTAA ATCAAAGGGT GTGGAGGAGT TTTTGTTGAT TAGTGTGAAT  GACCCTTTTG TGATGAAGGC ATGGAAAAAG TCATACCCAG AGACCAAAAA ATGTGAAGTT CTTAGCCGAC GGGTCTGCAA CCGACACCCT TGCCCTTGGT ATGAGCTTGA CCTAATTTGC 
AAAGTCAAAG TAGGCAAAGG CTCCCTTTCT TTTAAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCGA TCAAAGTTGG TGACAGCATT CTTGACGGAT CTCTTGCACA CTTCGACGAG AAAGATGAGA TGCAACAGGT CTCGGTTCAC TCTCTCGCCG CCGGCAAGAA AGTCGTCATC  TTTGGTGTCC ACAGTGCCTT CACTCCGACT TGCAGTATGA AGCATGTCCC CAGGTTGATT GAGAAATCTG AAGAACTTAA ATCAAAGGGT GTGGAGGAGT TTTTGTTGAT TAGTGTGAAT  GACCCTTTTG TGATGAAGGC ATGGAAAAAG TCATACCCAG AGACCAAAAA ATGTGAAGTT CTTAGCCGAC GGGTCTGCAA CCGACACCCT TGCCCTTGGT ATGAGCTTGA CCTAATTTGC 
AAAGTCAAAG TAGGCAAAGG CTCCCTTTCT TTTAAA 

Retrieve as FASTA