Entry information : CbraCSD01 (g3018/CHBRA114g00060)
Entry ID 13792
Creation 2016-06-21 (Christophe Dunand)
Last sequence changes 2016-06-21 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: CbraCSD01 (g3018/CHBRA114g00060)
Name (synonym) CbraCSD01 (g3018/CHBRA114g00060)
Class Cu/Zn SOD    [Orthogroup: CSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraCSD01
start..stop
S start..stop
ThasCSD01-1 230 5e-79 1..146 1..146
ThasCSD01 227 8e-78 1..146 1..146
AtrCSD02 225 1e-76 1..146 25..170
LeCSD01 222 5e-76 1..146 1..146
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 166526..166601 76 N° 2 170896..170997 102 N° 3 172799..172894 96 N° 4 174345..174376 32
N° 5 175441..175516 76 N° 6 176887..176980 94 N° 7 177670..177679 10  
join(166526..166601,170896..170997,172799..172894,174345..174376,175441..175516, 176887..176980,177670..177679)


exon

Literature and cross-references CbraCSD01 (g3018/CHBRA114g00060)
Protein sequence: CbraCSD01 (g3018/CHBRA114g00060)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   162
PWM (Da):   %s   16510.16  
PI (pH):   %s   5.95
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVKAVALLSG TENVKGVIYF SQEGDGPTHV TGKVSGLKPG LHGFHIHQHG DTTSGCMSTG PHFNPSGKTH GAPVDEERHA GDLGNAVASE DGVAEIDLTD SQIPLTGVNS ILGRAVVVHA 
DPDDLGKGGH ELSKTTGNAG GRLACGEFMF LLLEFTAPKS G* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (6 introns).
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTGAAGG CCGTGGCATT GCTCTCTGGC ACTGAGAACG TGAAGGGAGT TATCTACTTC AGCCAAGAAG GCGATGGGCC CACGCATGTT ACTGGGAAGG TATCGGGTCT AAAGCCCGGT  CTGCACGGAT TCCACATCCA TCAGCATGGA GACACAACGA GCGGCTGCAT GTCAACAGGT CCTCACTTCA ACCCCAGTGG AAAGACACAT GGGGCGCCAG TCGATGAAGA ACGTCACGCC  GGTGATTTGG GTAATGCCGT TGCATCCGAG GATGGGGTGG CGGAGATCGA TCTCACAGAT TCGCAGATCC CTCTGACTGG AGTTAACTCT ATCCTTGGTA GGGCCGTCGT CGTGCATGCA  GATCCTGATG ATCTGGGAAA GGGTGGCCAC GAGTTGAGCA AGACGACAGG GAATGCCGGT GGTCGGCTCG CGTGCGGTGA GTTTATGTTC CTCTTGCTTG AATTCACAGC CCCTAAGTCT 
GGATGA 

Retrieve as FASTA