Entry information : CbraMSD01 (g32597/CHBRA404g00120)
Entry ID 13793
Creation 2016-06-21 (Christophe Dunand)
Last sequence changes 2016-06-21 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: CbraMSD01 (g32597/CHBRA404g00120)
Name (synonym) CbraMSD01 (g32597/CHBRA404g00120)
Class Mn SOD    [Orthogroup: MSD002]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraMSD01
start..stop
S start..stop
CbraMSD02 362 3e-127 92..321 3..231
HaMSD01 167 5e-51 94..311 26..223
HaMSD02 165 3e-50 94..311 28..225
AtMSD01 163 3e-49 94..311 31..228
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 585188..585478 291 N° 2 590416..590609 194 N° 3 629728..629809 82 N° 4 639397..639801 405
join(585188..585478,590416..590609,629728..629809,639397..639801)


exon

Literature and cross-references CbraMSD01 (g32597/CHBRA404g00120)
Protein sequence: CbraMSD01 (g32597/CHBRA404g00120)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   324 (307)
PWM (Da):   %s   34860.47 (33253.6)  
PI (pH):   %s   9.33 (9.33) Peptide Signal:   %s   cut: 17 range:17-323
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAALAAAVVP LRLAAGLGLC SRLLSRRGSF LGSDVTPFMP PTSLAKNGSV RNGVVPRRPG RRVHTTALAA AAAGPGRETE TGAGATSSGT AGPYKLPDLP YDYNALEPFI DTATMRAHHD  GHHATYVSKL NEAIQDKGHL TGATLHQLQK AAIKSGAAVR NNAGGHYNHS LFWTYMAPRG MAAREPSGKL KDAIGETFGS FEKFQTLFNG ACAGVFGSGW VWLGVAEDGR LSIETTANQD 
NPLMEGVVLS KNTASGDRVA HTGGRSSIIP FMGQDVWEHA YYLKYQNKKV EYFSAWWNVL NWDKICEYYE KYAAKGQYIP VEM* 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Longer 5' (80 aa) with no match
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGGCGC TAGCGGCGGC CGTGGTCCCC TTGAGGCTCG CAGCGGGTCT CGGTCTGTGT TCCCGCCTCT TGTCGCGACG AGGGAGTTTT CTGGGATCGG ACGTGACGCC ATTCATGCCG  CCCACGTCAT TGGCCAAGAA TGGTAGTGTT AGGAACGGAG TGGTGCCGCG GAGGCCTGGC AGGAGGGTGC ATACGACCGC CTTGGCGGCG GCGGCTGCGG GGCCGGGAAG GGAGACGGAA  ACGGGGGCGG GGGCGACATC CTCGGGGACC GCGGGTCCGT ATAAATTGCC GGACCTCCCT TACGATTACA ACGCGCTGGA GCCTTTCATA GATACAGCGA CGATGCGGGC GCATCACGAC  GGACATCATG CGACATATGT GAGCAAGCTG AACGAGGCCA TTCAGGATAA AGGACACCTG ACAGGGGCGA CGCTACACCA GCTGCAGAAG GCCGCTATTA AGAGCGGTGC CGCGGTGCGC  AACAATGCTG GAGGTCATTA TAATCACAGC CTGTTTTGGA CGTATATGGC ACCGCGCGGT ATGGCGGCAC GTGAACCGTC AGGCAAACTG AAGGATGCGA TTGGGGAGAC ATTCGGCTCT  TTCGAAAAGT TTCAAACATT GTTCAATGGA GCCTGCGCAG GAGTGTTCGG CTCCGGTTGG GTGTGGCTGG GTGTTGCGGA GGATGGGCGT CTGTCGATAG AGACGACCGC AAACCAAGAC  AATCCTCTCA TGGAGGGTGT GGTTCTGAGC AAGAACACTG CCAGTGGCGA TCGGGTCGCC CACACGGGGG GGAGGAGCAG CATTATACCC TTCATGGGCC AGGATGTGTG GGAGCATGCT  TATTATCTCA AGTACCAGAA TAAGAAAGTG GAGTACTTTT CAGCCTGGTG GAATGTCTTG AACTGGGACA AGATCTGTGA GTACTACGAG AAGTACGCAG CCAAGGGGCA GTACATCCCT 
GTGGAAATGT AG 

Retrieve as FASTA