Entry information : CbraMSD03 (g49466/ CHBRA68g00150)
Entry ID 13794
Creation 2016-06-21 (Christophe Dunand)
Last sequence changes 2016-06-21 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: CbraMSD03 (g49466/ CHBRA68g00150)
Name (synonym) CbraMSD03 (g49466/ CHBRA68g00150)
Class Mn SOD    [Orthogroup: MSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraMSD03
start..stop
S start..stop
ThasMSD01 296 8e-102 83..302 5..230
AtMSD01 290 3e-99 88..302 9..228
LeMSD01 289 8e-99 88..301 10..224
KflMSD01 283 1e-96 95..303 18..224
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1000112..1000968 857 N° 2 1003682..1003763 82  
join(1000112..1000968,1003682..1003763)


exon

Literature and cross-references CbraMSD03 (g49466/ CHBRA68g00150)
Protein sequence: CbraMSD03 (g49466/ CHBRA68g00150)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   313
PWM (Da):   %s   33875.25  
PI (pH):   %s   7.85
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGPDSCLRND AQLERNDAHV QNGKIWKGHC SFGAISESLC AAPSRLFCLS VCPKVEGSDP FFCLSGSGGI LPAAMALLLR QLSAAGGRRF SAGLAAASTR GVQTVALPDL PYDYAELEPV  VSAEIMELHH AKHHQAYVNN YNVALEKYEA AEKKKDTHAM IALHGALRFN GGGHVNHCQF WENLAPEKKG GGELPQGPLA DAIATQFGSL DELIKKVNAA GAAVQGSGWV WLGVNKDTGK 
LLVDTTPNQD PLVVKGAGLV SILGIDVWEH AYYLQYKNVR PDYLKHIWKV VNWRDVTRRY EQAMKARVAA TK* 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Longer 5' (80 aa) with no match
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGGCCCG ATTCATGTTT GCGGAATGAC GCCCAACTTG AAAGGAATGA CGCCCATGTG CAAAATGGCA AAATATGGAA AGGGCATTGT AGTTTTGGCG CCATCAGCGA GTCGCTCTGC  GCGGCTCCGT CTCGGCTTTT CTGTCTGTCT GTCTGTCCTA AGGTTGAGGG TTCAGATCCC TTTTTCTGCC TGTCAGGCTC TGGTGGCATT TTGCCAGCAG CGATGGCGCT GCTCCTGCGC  CAGTTGTCGG CCGCCGGTGG GCGCCGTTTT TCGGCGGGCT TGGCGGCGGC CTCGACACGT GGAGTGCAGA CAGTGGCTCT GCCCGATCTT CCGTACGATT ACGCCGAGCT GGAGCCGGTC  GTCAGCGCAG AGATCATGGA GCTCCATCAT GCCAAGCATC ATCAAGCATA CGTAAATAAT TACAATGTGG CCTTGGAGAA GTATGAGGCG GCGGAGAAGA AGAAGGACAC CCATGCTATG  ATTGCCTTGC ACGGCGCGCT GCGGTTCAAC GGCGGGGGTC ACGTGAATCA CTGCCAGTTT TGGGAAAATC TGGCGCCGGA GAAAAAGGGA GGCGGGGAGC TGCCCCAAGG CCCGCTCGCC  GATGCCATTG CGACTCAGTT TGGATCCCTT GATGAGCTAA TTAAGAAGGT GAACGCCGCG GGAGCCGCGG TGCAGGGGTC GGGATGGGTA TGGCTAGGCG TCAACAAGGA CACGGGCAAG  CTCCTCGTTG ACACGACACC CAATCAAGAT CCCTTGGTGG TGAAAGGCGC GGGTCTGGTG TCCATCTTGG GGATCGACGT CTGGGAGCAC GCCTACTATC TCCAGTACAA GAATGTCAGG 
CCTGATTATT TGAAGCACAT CTGGAAGGTC GTTAATTGGC GTGACGTAAC AAGACGGTAT GAGCAGGCGA TGAAGGCCAG AGTCGCAGCC ACCAAATGA 

Retrieve as FASTA