Entry information : CbraMSD02 (g360/ CHBRA09g00790)
Entry ID 13795
Creation 2016-06-21 (Christophe Dunand)
Last sequence changes 2016-06-21 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: CbraMSD02 (g360/ CHBRA09g00790)
Name (synonym) CbraMSD02 (g360/ CHBRA09g00790)
Class Mn SOD    [Orthogroup: MSD002]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraMSD02
start..stop
S start..stop
CbraMSD01 360 9e-127 3..231 92..321
HaMSD01 164 8e-51 5..221 26..223
PpaMSD01 163 1e-50 7..221 36..226
HaMSD02 162 4e-50 5..221 28..225
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4902141..4902278 138 N° 2 4886350..4886431 82 N° 3 4884946..4885139 194 N° 4 4881570..4881854 285
complement(join(4881570..4881854,4884946..4885139,4886350..4886431,4902141..4902 278)


exon

Literature and cross-references CbraMSD02 (g360/ CHBRA09g00790)
Protein sequence: CbraMSD02 (g360/ CHBRA09g00790)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   233
PWM (Da):   %s   25843.67  
PI (pH):   %s   8.07
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGGPFKLPPL LYDMGALEPY IDAMTMKVHH GGHHATYVSK LNDAIKGKGE LESMKLVDLS QTAIKMGPAV RNNCGGHYNH TLFWTYMAPK GSSITKPTGN LQAAIDKNFG SFDQFQTAFN 
NACAGVFGSG WVWLGVAEDG RLSIETTANQ DNPLMDGVVL SQNTATGDRV PGTNGRKIIP FMGQDVWEHA YYLKYQNRKT EYFAAWWNVV NWNKICEYYD QYASKKLYIP VA* 

Retrieve as FASTA  
Remarks
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGTGGGC CGTTCAAGCT CCCGCCACTG CTGTACGATA TGGGTGCGCT GGAGCCGTAC ATCGATGCCA TGACGATGAA GGTACATCAT GGTGGTCATC ACGCGACGTA CGTCAGCAAG  CTGAATGATG CCATCAAGGG GAAAGGCGAA CTGGAGAGCA TGAAACTTGT GGATTTGAGC CAGACGGCAA TCAAGATGGG ACCTGCCGTT CGAAATAACT GTGGAGGTCA TTACAACCAC  ACACTGTTCT GGACGTACAT GGCCCCAAAG GGGTCATCCA TCACCAAGCC GACGGGTAAC CTTCAGGCAG CCATCGACAA AAATTTTGGG TCTTTCGATC AATTCCAGAC GGCCTTCAAC  AACGCATGTG CTGGAGTGTT TGGATCTGGA TGGGTGTGGT TGGGTGTTGC CGAGGATGGA AGATTGTCAA TCGAGACAAC GGCTAATCAG GATAATCCAT TGATGGACGG AGTTGTGCTG  AGCCAAAATA CTGCCACTGG TGATCGGGTG CCAGGCACGA ACGGAAGAAA GATTATACCC TTCATGGGAC AGGACGTTTG GGAGCATGCC TACTACCTCA AGTATCAGAA CCGAAAGACG 
GAGTACTTCG CAGCCTGGTG GAATGTAGTC AACTGGAACA AGATCTGCGA GTACTATGAC CAGTACGCTT CCAAGAAATT GTACATTCCT GTGGCTTGA 

Retrieve as FASTA