Entry information : CbraFSD01 (g17032/CHBRA206g00090)
Entry ID 13796
Creation 2016-06-21 (Christophe Dunand)
Last sequence changes 2016-06-21 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: CbraFSD01 (g17032/CHBRA206g00090)
Name (synonym) CbraFSD01 (g17032/CHBRA206g00090)
Class FeSOD    [Orthogroup: FSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraFSD01
start..stop
S start..stop
PpaFSD01 298 9e-102 50..292 56..271
MpFSD01 291 6e-99 14..293 7..279
AtFSD02 280 3e-94 47..289 36..268
PpaFSD02 273 2e-92 41..295 11..246
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 212834..213736 903  
join(212834..213736)


exon

Literature and cross-references CbraFSD01 (g17032/CHBRA206g00090)
Protein sequence: CbraFSD01 (g17032/CHBRA206g00090)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   301
PWM (Da):   %s   32947.56  
PI (pH):   %s   6.17
Sequence
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Send to Peroxiscan
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MAAMAATSAA SLAVSTPAGF LSSSSSVLDG GQRGAGAGAG TAVIVQQQRR SRHVALRAVA SPRAEFELPP PPYELDALEP HMSKNTLEFH WGKHHRAYVD NLNKQIAGTE EERYSLEEVV  LKSYNNGTPT PLFNNAGQIW NHTFFWESMK PAGGGAPKGK LLQLINRDFG SFDEFKTQFK AAGATQFGSG WAWLVIKPSL EEWIAQRQTG SDEPVKDKDG NIAKSLAVVK TPNAVTPVVW 
GDVPLLTMDV WEHAYYLDYQ NRRPAYMDVF LDQLVNWDAV EARLEAALST VNLTQQTFTS * 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCGA TGGCAGCCAC GTCAGCGGCT TCCTTGGCGG TCTCGACGCC GGCGGGATTT CTTTCGAGCT CGTCTTCCGT CCTCGACGGG GGGCAGCGGG GCGCAGGCGC GGGGGCGGGA  ACCGCGGTAA TCGTCCAGCA GCAGCGGAGG AGCCGCCACG TGGCATTGCG GGCGGTCGCC TCGCCCAGAG CGGAGTTCGA ACTCCCGCCG CCGCCTTATG AGCTCGATGC GCTGGAGCCG  CATATGTCCA AAAACACGCT GGAGTTCCAC TGGGGCAAGC ATCACCGCGC CTACGTAGAT AACCTTAACA AGCAGATTGC GGGGACAGAG GAGGAGAGGT ACTCTCTTGA GGAGGTGGTT  TTGAAATCCT ATAATAATGG GACTCCCACC CCCTTGTTCA ACAATGCCGG CCAGATTTGG AACCACACCT TCTTCTGGGA GTCGATGAAG CCAGCTGGCG GCGGCGCGCC CAAGGGGAAG  CTTCTGCAGC TAATTAATCG AGACTTCGGC TCGTTCGACG AGTTCAAGAC CCAGTTTAAG GCCGCCGGGG CCACCCAGTT TGGGTCCGGA TGGGCATGGT TGGTCATCAA GCCCAGCCTT  GAGGAGTGGA TTGCACAGAG ACAGACTGGC AGCGATGAAC CGGTGAAGGA CAAGGATGGA AATATCGCAA AGTCCTTGGC CGTCGTCAAG ACGCCTAATG CCGTCACTCC GGTGGTGTGG  GGAGATGTGC CGCTGCTGAC CATGGATGTG TGGGAGCATG CGTACTATTT GGATTACCAG AATCGACGTC CAGCGTACAT GGACGTGTTT CTAGATCAGC TCGTTAATTG GGACGCGGTG 
GAAGCGCGCC TCGAGGCCGC GCTCTCGACT GTTAATCTGA CTCAGCAAAC TTTCACTTCT TGA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCGA TGGCAGCCAC GTCAGCGGCT TCCTTGGCGG TCTCGACGCC GGCGGGATTT CTTTCGAGCT CGTCTTCCGT CCTCGACGGG GGGCAGCGGG GCGCAGGCGC GGGGGCGGGA  ACCGCGGTAA TCGTCCAGCA GCAGCGGAGG AGCCGCCACG TGGCATTGCG GGCGGTCGCC TCGCCCAGAG CGGAGTTCGA ACTCCCGCCG CCGCCTTATG AGCTCGATGC GCTGGAGCCG  CATATGTCCA AAAACACGCT GGAGTTCCAC TGGGGCAAGC ATCACCGCGC CTACGTAGAT AACCTTAACA AGCAGATTGC GGGGACAGAG GAGGAGAGGT ACTCTCTTGA GGAGGTGGTT  TTGAAATCCT ATAATAATGG GACTCCCACC CCCTTGTTCA ACAATGCCGG CCAGATTTGG AACCACACCT TCTTCTGGGA GTCGATGAAG CCAGCTGGCG GCGGCGCGCC CAAGGGGAAG  CTTCTGCAGC TAATTAATCG AGACTTCGGC TCGTTCGACG AGTTCAAGAC CCAGTTTAAG GCCGCCGGGG CCACCCAGTT TGGGTCCGGA TGGGCATGGT TGGTCATCAA GCCCAGCCTT  GAGGAGTGGA TTGCACAGAG ACAGACTGGC AGCGATGAAC CGGTGAAGGA CAAGGATGGA AATATCGCAA AGTCCTTGGC CGTCGTCAAG ACGCCTAATG CCGTCACTCC GGTGGTGTGG  GGAGATGTGC CGCTGCTGAC CATGGATGTG TGGGAGCATG CGTACTATTT GGATTACCAG AATCGACGTC CAGCGTACAT GGACGTGTTT CTAGATCAGC TCGTTAATTG GGACGCGGTG 
GAAGCGCGCC TCGAGGCCGC GCTCTCGACT GTTAATCTGA CTCAGCAAAC TTTCACTTCT TGA 

Retrieve as FASTA