Entry information : Cbra4CxxC01 (g41130/CHBRA578g00080)
Entry ID 13988
Creation 2016-10-25 (Christophe Dunand)
Last sequence changes 2016-10-25 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-25 (Christophe Dunand)
Peroxidase information: Cbra4CxxC01 (g41130/CHBRA578g00080)
Name (synonym) Cbra4CxxC01 (g41130/CHBRA578g00080)
Class 4CxxC Grx    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Cbra4CxxC01
start..stop
S start..stop
Ppa4CxxC02 133 3e-40 49..197 7..148
Ppa4CxxC01 134 3e-40 45..198 42..188
Ha4CxxC10 135 7e-40 49..200 98..246
Ppa4CxxC06 132 9e-40 50..197 21..161
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 283323..283964 642  
complement(join(283323..283964))


exon

Literature and cross-references Cbra4CxxC01 (g41130/CHBRA578g00080)
Protein sequence: Cbra4CxxC01 (g41130/CHBRA578g00080)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   213
PWM (Da):   %s   23716.37  
PI (pH):   %s   4.6
Sequence
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Send to Peroxiscan
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MYSEIGEEEK ESTASQGARK ECNSGAGEGE VICQEMVREV LGDRGCNAVV LYTTSVRAVR RTFDACQQAR QILKCHGIEM DERDVSIDSG YRLELRKLMG GDRPIILPQI FIQGRYVGSL 
EEVMNLNESR ELRVLLAGVS RRSPEDVCEG CGDLRFLVCM VCYGSRKVVV THEDGEEERT VQCDNCNEYG LERCPICNSG RGVDDSSWAI RMQ 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron). Prediction confirmed with RNA seq
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTATTCGG AGATAGGAGA GGAGGAGAAG GAAAGCACTG CCAGCCAGGG AGCCAGGAAA GAGTGTAATA GTGGAGCCGG AGAAGGAGAG GTCATCTGCC AAGAGATGGT GAGAGAAGTG  CTTGGGGATC GAGGCTGCAA CGCGGTTGTT CTTTACACAA CTTCGGTGAG AGCTGTCCGG CGGACTTTTG ATGCGTGCCA GCAGGCTAGG CAGATTCTCA AATGCCACGG AATAGAGATG  GATGAGAGGG ATGTCAGCAT CGACTCAGGG TATCGGCTGG AGCTGAGGAA GCTGATGGGA GGAGATAGGC CCATTATTCT CCCTCAGATC TTCATCCAAG GAAGGTATGT AGGAAGTTTA  GAGGAGGTAA TGAATCTGAA CGAAAGCCGA GAGTTAAGAG TGCTGTTGGC AGGAGTGTCA CGCCGAAGCC CAGAGGACGT CTGCGAAGGG TGTGGAGACC TCCGATTCCT CGTCTGCATG  GTATGTTATG GAAGTCGAAA GGTTGTGGTC ACTCATGAGG ACGGCGAAGA GGAAAGAACG GTGCAATGCG ACAACTGCAA CGAATACGGA CTCGAGCGAT GCCCTATATG CAACAGTGGT 
AGAGGAGTGG ACGACTCTTC GTGGGCAATA AGGATGCAAT GA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTATTCGG AGATAGGAGA GGAGGAGAAG GAAAGCACTG CCAGCCAGGG AGCCAGGAAA GAGTGTAATA GTGGAGCCGG AGAAGGAGAG GTCATCTGCC AAGAGATGGT GAGAGAAGTG  CTTGGGGATC GAGGCTGCAA CGCGGTTGTT CTTTACACAA CTTCGGTGAG AGCTGTCCGG CGGACTTTTG ATGCGTGCCA GCAGGCTAGG CAGATTCTCA AATGCCACGG AATAGAGATG  GATGAGAGGG ATGTCAGCAT CGACTCAGGG TATCGGCTGG AGCTGAGGAA GCTGATGGGA GGAGATAGGC CCATTATTCT CCCTCAGATC TTCATCCAAG GAAGGTATGT AGGAAGTTTA  GAGGAGGTAA TGAATCTGAA CGAAAGCCGA GAGTTAAGAG TGCTGTTGGC AGGAGTGTCA CGCCGAAGCC CAGAGGACGT CTGCGAAGGG TGTGGAGACC TCCGATTCCT CGTCTGCATG  GTATGTTATG GAAGTCGAAA GGTTGTGGTC ACTCATGAGG ACGGCGAAGA GGAAAGAACG GTGCAATGCG ACAACTGCAA CGAATACGGA CTCGAGCGAT GCCCTATATG CAACAGTGGT 
AGAGGAGTGG ACGACTCTTC GTGGGCAATA AGGATGCAAT GA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGCCAAGGTG AGGAGGCAAT CTCATCAAGG TTTAGTTCCC CTTCCTACGT CAACCATTTT CTATGATGCA CTGCCAAAGG CGCAGGAAAG GGCTTCCCAC GAATGGCCCA GGGTCAGGTT  TAGCCATGAA GAGCTTGGCG ATGGACCTGT TTTGGCCGCC AAGTCAGATC CCATATCTAT GTATTCGGAG ATAGGAGAGG AGGAGAAGGA AAGCACTGCC AGCCAGGGAG CCAGGAAAGA  GTGTAATAGT GGAGCCGGAG AAGGAGAGGT CATCTGCCAA GAGATGGTGA GAGAAGTGCT TGGGGATCGA GGCTGCAACG CGGTTGTTCT TTACACAACT TCGGTGAGAG CTGTCCGGCG  GACTTTTGAT GCGTGCCAGC AGGCTAGGCA GATTCTCAAA TGCCACGGAA TAGAGATGGA TGAGAGGGAT GTCAGCATCG ACTCAGGGTA TCGGCTGGAG CTGAGGAAGC TGATGGGAGG  AGATAGGCCC ATTATTCTCC CTCAGATCTT CATCCAAGGA AGGTATGTAG GAAGTTTAGA GGAGGTAATG AATCTGAACG AAAGCCGAGA GTTAAGAGTG CTGTTGGCAG GAGTGTCACG  CCGAAGCCCA GAGGACGTCT GCGAAGGGTG TGGAGACCTC CGATTCCTCG TCTGCATGGT ATGTTATGGA AGTCGAAAGG TTGTGGTCAC TCATGAGGAC GGCGAAGAGG AAAGAACGGT  GCAATGCGAC AACTGCAACG AATACGGACT CGAGCGATGC CCTATATGCA ACAGTGGTAG AGGAGTGGAC GACTCTTCGT GGGCAATAAG GATGCAATGA GAGGCATGTA CACGCAGGCA 
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGA 

Retrieve as FASTA