Entry information : HaTrxM06HanXRQChr13g0407021
Entry ID 14511
Creation 2017-11-03 (Christophe Dunand)
Last sequence changes 2017-11-03 (Christophe Dunand)
Sequence status N/D
Reviewer Not yet reviewed
Last annotation changes 2017-11-23 (Catherine Mathe (Scipio))
Peroxidase information: HaTrxM06HanXRQChr13g0407021
Name HaTrxM06HanXRQChr13g0407021
Class Thioredoxin Type M    [Orthogroup: TrxM001]
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus
Organism Helianthus annuus (Sunflower)    [TaxId: 4232 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value HaTrxM06
start..stop
S start..stop
HaTrxM01 249 6e-86 1..163 35..212
HaTrxM03 246 8e-85 1..163 1..185
HaTrxM04 230 1e-78 1..163 1..185
AtTrxM04 191 3e-63 17..163 38..191
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 113900673..113900850 178 N° 2 113901750..113902063 314  
join(113900673..113900850,113901750..113902063)


exon

Literature and cross-references HaTrxM06HanXRQChr13g0407021
DNA ref. HanXRQ genome:   HanXRQChr13 (113900673..113902063)
Protein sequence: HaTrxM06HanXRQChr13g0407021
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   163
PWM (Da):   %s   17691.4  
PI (pH):   %s   9.6
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MARVLETLTLPRASAVPATSRNFVNLQASRGLRIQSFGSPKLGRKLSARIVCQAQEAVQVLAVTDATWQKNVLESDVPVLVEFWAPWCGPCRMIHPIIDELAKEYTGKLACYKVNTDESPTIASQYGIRSIPTVIIFKGGEKKDAVIGAVPKSTLSTSIEKFL

Retrieve as FASTA  
Remarks
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCGTGTTCTTGAAACTCTTACACTTCCCCGGGCCTCTGCCGTCCCAGCGACATCACGGAACTTTGTAAATTTGCAGGCATCAAGAGGTTTGAGAATCCAGTCGTTTGGATCGCCT
AAGTTGGGACGTAAATTAAGCGCACGTATTGTTTGCCAGGCTCAGGAAGCTGTTCAAG
GTTAGAATATTTAATTGTACCATTTATAATTGTCCTAGCTAGATTTCAGTTCATGTATCTGT
TACGAGACTCATTTAACAGGGGGAGGGGAGGGAAAAGAGATAAAAATATGAAAAACCATGTTCCCGAGTTTCATTTAACAGGGGGAGGGGAGGGAAAAGGGAAGAAAATATGACCAAATA
TGACCATATATTCATCCTCCCAAATTGGAGAGATTAGGAAAGAAAATTTTCCTTCTCCTCCCCTCCCCTCACCTCCCCCTGTTAAATGACTCGGGAACATAGTGGAAATGAAAAGTCTGT
TTATGTTTGAATGGTGGATGAGAGACGTATTGGATCAATGTCTAGTATGGGGTGTTCATCGATTTGGTTTTTGGATTTTATTTAATCATAACTCAAAACCAAGCCGAAGAAAATAAGTGT
GCGAATTCGGCTTGGTTTACTTTTTATCTAAAAGTAATCTTTTAAAAGTAAATTATATTGTAATTTTTATTATAATCCACAAATTTGGTATAATTAATATATTAAGTAACTATTTAGTTA
AGTTTTATATATTTTTTTTTTTTGGAAAATGTCACATAATAGTAACAAAGTTTTAAAAGTGTTTTAATTAGGTCACTCGTATCGTTTTTCTTCCAATTAAATAACTTAACATTCAAATCG
AGTCATGTCCTTTTTCTATGTGTCAAGAAAAAAATAGAGCACAAGATGCTGGAGGCGGATTATTTTAATATATGAAATTATATTTATTAAAAATAAAAACACTTTAATTACATTAAAAAC
TAAAAAAACAAGTTACAATAAAAGGGAAAAAAAAAACAAAAATCCAAATCACCACGGTTACCTATGAAATGTATGAATAGTTTTACCAAATTTATAACGCAATTTGCTGTTTTACAGTTC
TTGCAGTCACTGATGCAACATGGCAAAAAAATGTCCTGGAGTCTGATGTCCCTGTACTGGTTGAGTTCTGGGCCCCATGGTGCGGGCCTTGTCGCATGATCCACCCGATCATCGATGAAC
TTGCAAAGGAGTACACAGGGAAACTCGCTTGTTACAAGGTGAATACTGATGAAAGCCCCACAATTGCAAGCCAATATGGGATCAGAAGCATCCCCACTGTTATTATATTCAAAGGTGGTG
AGAAGAAAGATGCAGTTATTGGTGCAGTTCCTAAATCTACACTCTCTACCTCCATTGAAAAGTTCTTGTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCGTGTTCTTGAAACTCTTACACTTCCCCGGGCCTCTGCCGTCCCAGCGACATCACGGAACTTTGTAAATTTGCAGGCATCAAGAGGTTTGAGAATCCAGTCGTTTGGATCGCCT
AAGTTGGGACGTAAATTAAGCGCACGTATTGTTTGCCAGGCTCAGGAAGCTGTTCAAG
TTCTTGCAGTCACTGATGCAACATGGCAAAAAAATGTCCTGGAGTCTGATGTCCCTGTACTG
GTTGAGTTCTGGGCCCCATGGTGCGGGCCTTGTCGCATGATCCACCCGATCATCGATGAACTTGCAAAGGAGTACACAGGGAAACTCGCTTGTTACAAGGTGAATACTGATGAAAGCCCC
ACAATTGCAAGCCAATATGGGATCAGAAGCATCCCCACTGTTATTATATTCAAAGGTGGTGAGAAGAAAGATGCAGTTATTGGTGCAGTTCCTAAATCTACACTCTCTACCTCCATTGAA
AAGTTCTTGTAG

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTTGTGCCAT ATCTAAAGAA GTGGGCCCAG CAATATCAAG GCCCAAACAA ATGTCATCCA ATCCAATCCA AGAAGATAAA CCGTGTGCAA AGCACGTGAT ACCACCACCA ACTAACAATT  AACAAACTCC ATTCAACCCA ATTATCTATT CTGGTTCATC CACACAACAG AAACTCCATT TCTTCTCTTT GTATAGTTAG ATGGCTCGTG TTCTTGAAAC TCTTACACTT CCCCGGGCCT  CTGCCGTCCC AGCGACATCA CGGAACTTTG TAAATTTGCA GGCATCAAGA GGTTTGAGAA TCCAGTCGTT TGGATCGCCT AAGTTGGGAC GTAAATTAAG CGCACGTATT GTTTGCCAGG  CTCAGGAAGC TGTTCAAGTT CTTGCAGTCA CTGATGCAAC ATGGCAAAAA AATGTCCTGG AGTCTGATGT CCCTGTACTG GTTGAGTTCT GGGCCCCATG GTGCGGGCCT TGTCGCATGA  TCCACCCGAT CATCGATGAA CTTGCAAAGG AGTACACAGG GAAACTCGCT TGTTACAAGG TGAATACTGA TGAAAGCCCC ACAATTGCAA GCCAATATGG GATCAGAAGC ATCCCCACTG  TTATTATATT CAAAGGTGGT GAGAAGAAAG ATGCAGTTAT TGGTGCAGTT CCTAAATCTA CACTCTCTAC CTCCATTGAA AAGTTCTTGT AGAGCTCTTG TGGTGTATAT TTATTTATTT 
ATGTATAAAT ACTCTTTAGA TCGATTTGTT CCTATATATA CTACTACTCT TGGATCTTCA TCTTTGAAAT GGTATTAAAT TTTTTTTATG GTATACAA 

Retrieve as FASTA