Entry information : HaSTC24HanXRQChr13g0398851
Entry ID 14599
Creation 2017-11-07 (Christophe Dunand)
Last sequence changes 2017-11-07 (Christophe Dunand)
Sequence status N/D
Reviewer Not yet reviewed
Last annotation changes 2017-11-23 (Catherine Mathe (Scipio))
Peroxidase information: HaSTC24HanXRQChr13g0398851
Name HaSTC24HanXRQChr13g0398851
Class Stellacyanin    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus
Organism Helianthus annuus (Sunflower)    [TaxId: 4232 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value HaSTC24
start..stop
S start..stop
HaSTC23 157 6e-51 1..125 1..125
HaSTC33 132 9e-40 5..124 4..122
HaSTC35 132 1e-39 5..124 4..122
HaSTC32 132 1e-39 5..124 4..122
HaSTC33 129 1e-38 28..124 145..240
HaSTC35 129 1e-38 28..124 147..242
HaSTC32 128 4e-38 28..124 147..242
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 80718077..80718248 172 N° 2 80717778..80717986 209  
complement(join(80717778..80717986,80718077..80718248))


exon

Literature and cross-references HaSTC24HanXRQChr13g0398851
DNA ref. HanXRQ genome:   HanXRQChr13 (80718248..80717778)
Protein sequence: HaSTC24HanXRQChr13g0398851
Sequence Properties
first value : protein
second value (mature protein)
Length (aa): %sProtein length in amino acid 126 (101)
PWM (Da): %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
13641.94 (10932.4) Transmb domain: %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i7-29o94-116i
PI (pH): %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
6.49 (6.22) Peptide Signal: %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 26 range:26-126
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFLNHIMVVLTLFVVAILPTTTIATEYTVGDDSGWTVQYDYQAWAKNKDFKVGDTLVFNYPKGIHNVFKVNGSSYADCIIPPPDQAYTSGHDVIALPVAGKAWFICGVGVHCSALNQKLAINVKV

Retrieve as FASTA  
Remarks
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCTTGAACCATATTATGGTTGTTTTAACCCTTTTTGTTGTCGCGATACTTCCGACCACCACCATAGCAACGGAGTATACAGTCGGAGATGACAGTGGTTGGACCGTTCAATAT
GATTATCAAGCTTGGGCCAAAAATAAAGATTTTAAAGTTGGTGACACGTTAG
GTAAAAAAATCAGTATGTATATGATTTTGTATTAAACGCGCCCTTTATGTTATTTTGTGAATCAACTT
TAACGTTATTTTAACAATACAGTGTTTAATTATCCGAAAGGGATACATAACGTGTTCAAAGTGAATGGAAGTTCGTATGCTGATTGCATTATTCCACCGCCAGATCAAGCTTACACCTCT
GGGCACGACGTTATAGCACTCCCGGTCGCAGGCAAAGCGTGGTTTATTTGTGGTGTGGGAGTACATTGTTCTGCATTGAACCAAAAGCTAGCCATAAATGTTAAAGTGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCTTGAACCATATTATGGTTGTTTTAACCCTTTTTGTTGTCGCGATACTTCCGACCACCACCATAGCAACGGAGTATACAGTCGGAGATGACAGTGGTTGGACCGTTCAATAT
GATTATCAAGCTTGGGCCAAAAATAAAGATTTTAAAGTTGGTGACACGTTAG
TGTTTAATTATCCGAAAGGGATACATAACGTGTTCAAAGTGAATGGAAGTTCGTATGCTGATTGCATT
ATTCCACCGCCAGATCAAGCTTACACCTCTGGGCACGACGTTATAGCACTCCCGGTCGCAGGCAAAGCGTGGTTTATTTGTGGTGTGGGAGTACATTGTTCTGCATTGAACCAAAAGCTA
GCCATAAATGTTAAAGTGTGA

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCT TGAACCATAT TATGGTTGTT TTAACCCTTT TTGTTGTCGC GATACTTCCG ACCACCACCA TAGCAACGGA GTATACAGTC GGAGATGACA GTGGTTGGAC CGTTCAATAT  GATTATCAAG CTTGGGCCAA AAATAAAGAT TTTAAAGTTG GTGACACGTT AGTGTTTAAT TATCCGAAAG GGATACATAA CGTGTTCAAA GTGAATGGAA GTTCGTATGC TGATTGCATT  ATTCCACCGC CAGATCAAGC TTACACCTCT GGGCACGACG TTATAGCACT CCCGGTCGCA GGCAAAGCGT GGTTTATTTG TGGTGTGGGA GTACATTGTT CTGCATTGAA CCAAAAGCTA 
GCCATAAATG TTAAAGTGTG A 

Retrieve as FASTA