Entry information : AhalPrx08 (Araha.59848s0001)
Entry ID 14789
Creation 2018-01-09 (Christophe Dunand)
Last sequence changes 2018-01-09 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-01-10 (Christophe Dunand)
Peroxidase information: AhalPrx08 (Araha.59848s0001)
Name (synonym) AhalPrx08 (Araha.59848s0001)
Class Class III peroxidase     [Orthogroup: Prx143]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis halleri    [TaxId: 81970 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AhalPrx08
start..stop
S start..stop
AlyPrx70 380 3e-135 1..192 1..194
AtPrx70 377 6e-134 1..192 1..192
BstrPrx73 345 2e-121 1..192 1..193
CrubPrx81 333 2e-116 1..191 1..192
Literature and cross-references AhalPrx08 (Araha.59848s0001)
Protein sequence: AhalPrx08 (Araha.59848s0001)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   195 (171)
PWM (Da):   %s   21183.96 (18424.5) Transmb domain:   %s   i7-26o
PI (pH):   %s   7.81 (7.88) Peptide Signal:   %s   cut: 25 range:25-195
Sequence
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Send to Peroxiscan
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MGSFTNFNLC YVLLPFFLVL AANATHKNFF LPRPRIGYYG SACWNVESIV RSVVESNYLA NPANAPGILR MHFHDCFVQG CDASVLLAGP NSERTAIPNL SLRGFNVIEE AKTQLEIACP 
RTVSCADILA LAARDFVHLA GGPWWPVPLG RLDGRVSLAS NVILPGPTDS VAVQKLRFAE KNLNTQDLVV LAGTL* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. exon 4 is missing due to N in the sequence.
DNA
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TCTGAATCAT ATTTACATAT ATGCACCCTT TGGTTAAAAA CTAAGAAGAA ACCAAAATGG GAAGTTTTAC TAATTTTAAT CTTTGCTACG TTCTCTTACC GTTTTTCCTT GTCCTAGCCG  CGAATGCAAC ACATAAAAAC TTTTTCCTCC CAAGGCCACG GATCGGGTAT TACGGTAGTG CATGCTGGAA TGTAGAATCG ATAGTTAGGT CCGTGGTCGA GTCTAACTAT CTTGCTAATC  CAGCCAATGC TCCGGGCATT TTGCGTATGC ACTTTCACGA TTGTTTCGTC CAAGGCTGTG ACGCCTCCGT TCTCCTAGCC GGACCTAACT CCGAGAGAAC GGCGATTCCG AATCTATCGT  TGAGAGGATT TAATGTCATC GAAGAAGCTA AGACGCAGCT TGAGATCGCT TGTCCTCGAA CTGTCTCTTG TGCTGATATT CTCGCACTCG CTGCACGCGA CTTCGTCCAT TTGGTATAAC  TTACTTTTAT AATTTTATTT ATATACATAA GTCTATCGTT CGTCTTGGTT TTTAACGTCA CATGCATATA TGGTTATCTA TTGATCGTGA TTAAGTGAAA GTTTTATATG TATGTATATA  GGCCGGTGGA CCATGGTGGC CAGTTCCATT GGGGCGACTC GATGGCCGGG TTTCGCTAGC CTCGAATGTC ATTTTGCCGG GACCTACCGA CTCCGTTGCC GTACAGAAGC TGAGGTTCGC 
CGAAAAAAAT CTTAATACCC AAGATCTCGT TGTCCTTGCT GGTACTTTGT AG 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGAAGTT TTACTAATTT TAATCTTTGC TACGTTCTCT TACCGTTTTT CCTTGTCCTA GCCGCGAATG CAACACATAA AAACTTTTTC CTCCCAAGGC CACGGATCGG GTATTACGGT  AGTGCATGCT GGAATGTAGA ATCGATAGTT AGGTCCGTGG TCGAGTCTAA CTATCTTGCT AATCCAGCCA ATGCTCCGGG CATTTTGCGT ATGCACTTTC ACGATTGTTT CGTCCAAGGC  TGTGACGCCT CCGTTCTCCT AGCCGGACCT AACTCCGAGA GAACGGCGAT TCCGAATCTA TCGTTGAGAG GATTTAATGT CATCGAAGAA GCTAAGACGC AGCTTGAGAT CGCTTGTCCT  CGAACTGTCT CTTGTGCTGA TATTCTCGCA CTCGCTGCAC GCGACTTCGT CCATTTGGCC GGTGGACCAT GGTGGCCAGT TCCATTGGGG CGACTCGATG GCCGGGTTTC GCTAGCCTCG 
AATGTCATTT TGCCGGGACC TACCGACTCC GTTGCCGTAC AGAAGCTGAG GTTCGCCGAA AAAAATCTTA ATACCCAAGA TCTCGTTGTC CTTGCTGGTA CTTTGTAG 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCTGAATCAT ATTTACATAT ATGCACCCTT TGGTTAAAAA CTAAGAAGAA ACCAAAATGG GAAGTTTTAC TAATTTTAAT CTTTGCTACG TTCTCTTACC GTTTTTCCTT GTCCTAGCCG  CGAATGCAAC ACATAAAAAC TTTTTCCTCC CAAGGCCACG GATCGGGTAT TACGGTAGTG CATGCTGGAA TGTAGAATCG ATAGTTAGGT CCGTGGTCGA GTCTAACTAT CTTGCTAATC  CAGCCAATGC TCCGGGCATT TTGCGTATGC ACTTTCACGA TTGTTTCGTC CAAGGCTGTG ACGCCTCCGT TCTCCTAGCC GGACCTAACT CCGAGAGAAC GGCGATTCCG AATCTATCGT  TGAGAGGATT TAATGTCATC GAAGAAGCTA AGACGCAGCT TGAGATCGCT TGTCCTCGAA CTGTCTCTTG TGCTGATATT CTCGCACTCG CTGCACGCGA CTTCGTCCAT TTGGCCGGTG  GACCATGGTG GCCAGTTCCA TTGGGGCGAC TCGATGGCCG GGTTTCGCTA GCCTCGAATG TCATTTTGCC GGGACCTACC GACTCCGTTG CCGTACAGAA GCTGAGGTTC GCCGAAAAAA 
ATCTTAATAC CCAAGATCTC GTTGTCCTTG CTGGTACTTT GTAG 

Retrieve as FASTA