Entry information : AhalPrx18 (Araha.25244s0001)
Entry ID 14799
Creation 2018-01-09 (Christophe Dunand)
Last sequence changes 2018-01-09 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-01-10 (Christophe Dunand)
Peroxidase information: AhalPrx18 (Araha.25244s0001)
Name (synonym) AhalPrx18 (Araha.25244s0001)
Class Class III peroxidase     [Orthogroup: Prx030]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis halleri    [TaxId: 81970 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AhalPrx18
start..stop
S start..stop
AlyPrx21 386 1e-137 1..190 1..190
BstrPrx19 384 5e-137 1..190 1..190
BrPrx21-1Ab_other 355 1e-125 6..190 7..191
AtPrx21 354 4e-125 1..190 1..190
Literature and cross-references AhalPrx18 (Araha.25244s0001)
Protein sequence: AhalPrx18 (Araha.25244s0001)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   190 (162)
PWM (Da):   %s   21187.76 (18087.1) Transmb domain:   %s   i7-26o
PI (pH):   %s   7.73 (6.76) Peptide Signal:   %s   cut: 29 range:29-190
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MANAKPFCLF GVFCLLLQLF SIFRIGNGEL EMNYYRESCP KAEEIIRQQV ETLYYKHGNT AVSWLRNLFH DCVVKSCDAS LLLETARGVE SEQKSKRSFG MRNFKYVKII KDALEKECPS 
TVSCADIVAL SARDGIVMLK GPKIEMLKTG RRDSRGSYLG DVETLIPNHN DSLSSVISTF NSIGIDVEAT 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Exon 4 is missing due to scaffold border (small scaffold).
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATTAAGTAGA AAAAGATAAG AGTGAAGAGA AGAGAGCAAT GGCCAATGCG AAGCCTTTTT GTCTCTTCGG GGTCTTTTGT CTGTTATTAC AGTTATTCTC CATCTTCCGT ATCGGTAAAT  ACATTCTTCC CTGATCTAAT CATGTTATGC CATGTGTCTC CATGCTTATC ATTTACCTAT AGACTTGTAA TGAATTTCTA ATTCACTAAT ACAATTTCCA CCGTTAAATT TCAACAAATA  CATCAACACA TCTACATAAA GTATATATTC TATAAACATT GTAGGAAATG GGGAATTGGA GATGAACTAT TACAGAGAAA GTTGTCCAAA AGCGGAAGAG ATTATAAGAC AACAAGTGGA  GACGCTTTAC TACAAACACG GCAACACAGC CGTATCTTGG CTCCGTAATC TCTTCCATGA CTGCGTCGTC AAGGTAATTA AATCCTTTTG ATAGTTTTAT AATTCACCAA AATTAATACG  ACAAAACTAT ATGTAGTATT ATTAACGTTC ATGTGTATTT TTTCTTATTT TGTAGTCGTG TGATGCGTCG CTGCTTCTAG AGACAGCGAG AGGTGTGGAA TCTGAGCAGA AATCGAAGAG  GAGTTTCGGT ATGAGAAACT TTAAGTACGT TAAGATTATC AAAGACGCAC TCGAGAAAGA GTGTCCTTCC ACAGTCTCTT GCGCTGATAT TGTCGCTCTC TCTGCTAGAG ACGGTATTGT  CATGGTGCGT TTAGGCAAAT TTTTACATGC ATTTTGGTTG GGAATTTTTT TGTATTTGTG GTAATCAATA TTTGGTGAAA TTATTAGCTG AAAGGGCCAA AGATAGAGAT GTTAAAGACA  GGAAGGAGAG ATAGCAGAGG GAGCTATTTG GGAGATGTTG AGACTCTAAT CCCTAACCAC AATGACTCTC TTTCCTCTGT TATATCCACC TTTAACTCCA TTGGTATCGA TGTCGAAGCC 
ACC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCAATG CGAAGCCTTT TTGTCTCTTC GGGGTCTTTT GTCTGTTATT ACAGTTATTC TCCATCTTCC GTATCGGAAA TGGGGAATTG GAGATGAACT ATTACAGAGA AAGTTGTCCA  AAAGCGGAAG AGATTATAAG ACAACAAGTG GAGACGCTTT ACTACAAACA CGGCAACACA GCCGTATCTT GGCTCCGTAA TCTCTTCCAT GACTGCGTCG TCAAGTCGTG TGATGCGTCG  CTGCTTCTAG AGACAGCGAG AGGTGTGGAA TCTGAGCAGA AATCGAAGAG GAGTTTCGGT ATGAGAAACT TTAAGTACGT TAAGATTATC AAAGACGCAC TCGAGAAAGA GTGTCCTTCC  ACAGTCTCTT GCGCTGATAT TGTCGCTCTC TCTGCTAGAG ACGGTATTGT CATGCTGAAA GGGCCAAAGA TAGAGATGTT AAAGACAGGA AGGAGAGATA GCAGAGGGAG CTATTTGGGA 
GATGTTGAGA CTCTAATCCC TAACCACAAT GACTCTCTTT CCTCTGTTAT ATCCACCTTT AACTCCATTG GTATCGATGT CGAAGCCACC 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATTAAGTAGA AAAAGATAAG AGTGAAGAGA AGAGAGCAAT GGCCAATGCG AAGCCTTTTT GTCTCTTCGG GGTCTTTTGT CTGTTATTAC AGTTATTCTC CATCTTCCGT ATCGGAAATG  GGGAATTGGA GATGAACTAT TACAGAGAAA GTTGTCCAAA AGCGGAAGAG ATTATAAGAC AACAAGTGGA GACGCTTTAC TACAAACACG GCAACACAGC CGTATCTTGG CTCCGTAATC  TCTTCCATGA CTGCGTCGTC AAGTCGTGTG ATGCGTCGCT GCTTCTAGAG ACAGCGAGAG GTGTGGAATC TGAGCAGAAA TCGAAGAGGA GTTTCGGTAT GAGAAACTTT AAGTACGTTA  AGATTATCAA AGACGCACTC GAGAAAGAGT GTCCTTCCAC AGTCTCTTGC GCTGATATTG TCGCTCTCTC TGCTAGAGAC GGTATTGTCA TGCTGAAAGG GCCAAAGATA GAGATGTTAA  AGACAGGAAG GAGAGATAGC AGAGGGAGCT ATTTGGGAGA TGTTGAGACT CTAATCCCTA ACCACAATGA CTCTCTTTCC TCTGTTATAT CCACCTTTAA CTCCATTGGT ATCGATGTCG 
AAGCCACC 

Retrieve as FASTA