Entry information : AhalPrx28 (Araha.29501s0001)
Entry ID 14809
Creation 2018-01-09 (Christophe Dunand)
Last sequence changes 2018-01-09 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-01-10 (Christophe Dunand)
Peroxidase information: AhalPrx28 (Araha.29501s0001)
Name (synonym) AhalPrx28 (Araha.29501s0001)
Class Class III peroxidase     [Orthogroup: Prx006]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis halleri    [TaxId: 81970 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AhalPrx28
start..stop
S start..stop
AlyPrx54 423 3e-151 8..224 143..357
AtPrx54 402 6e-143 8..224 143..358
BstrPrx43 389 7e-138 8..224 143..358
AruPrx54 387 7e-137 8..224 143..358
Literature and cross-references AhalPrx28 (Araha.29501s0001)
Protein sequence: AhalPrx28 (Araha.29501s0001)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   224
PWM (Da):   %s   23636.49  
PI (pH):   %s   4.19
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MFNHLLQAGG PSWAVLLGRR DGLTANLSGA NSLPSPFEGL NNITSKFVAV GLNTTDVVAL SGAHTFGRGQ CVAFNNRLFN FNGTGNPDPT LNSTLLSSLQ QLCPQNGSAS GITNLDLSTP 
DAFDKYYFTN LQSNNGLLQS DQELFSNSGS ATVPIVNSFA SNQTLFFEAF VQSMIKMGNI SPLTGNSGEI RQDCKVVNGQ SSATEAEDIQ LQSDSDGPVS VADM* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 5'end (exons 1 and 2) is missing due to scaffold border. Exon 3 is found two times!!!
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTTTAATC ATCTTCTTCA GGCAGGAGGG CCTTCATGGG CTGTGTTATT AGGAAGAAGA GATGGTCTCA CTGCAAACTT GTCCGGAGCC AATTCTCTTC CCTCTCCCTT CGAAGGCCTT  AACAACATCA CATCTAAATT TGTAGCTGTC GGGCTAAATA CAACCGATGT AGTAGCCTTG TCTGGTAAAT CATATACATG TTCAAGAACT TGCAGCTTAA TTCAAACAAA ACCCTAATTA  ATGTCATTTC TGTTGTGGTT CAATATGCAT AGGAGCACAT ACGTTTGGGC GTGGTCAATG CGTAGCGTTC AACAATAGAC TATTCAACTT CAACGGGACA GGAAACCCCG ACCCGACTCT  GAACTCAACA CTTCTCAGCA GTCTTCAACA GCTATGTCCT CAAAACGGCA GCGCATCAGG GATCACCAAT CTCGATCTGA GCACACCTGA TGCGTTCGAT AAATATTACT TCACAAACCT  TCAGAGTAAC AATGGGCTTC TTCAGTCAGA CCAGGAACTG TTCTCCAACA GCGGTTCAGC CACCGTCCCG ATTGTTAATT CCTTTGCAAG TAACCAAACT CTGTTTTTTG AGGCGTTTGT  TCAGTCTATG ATCAAGATGG GGAACATAAG TCCATTGACT GGGAATAGTG GAGAGATTAG ACAAGATTGT AAGGTGGTCA ATGGACAGTC ATCAGCCACT GAAGCAGAGG ACATTCAGTT  ACAATCTGAC TCTGACGGAC CAGTGAGTGT AGCAGATATG TAAACAACGA TGGGATCAGT TTCACCGTTT GTTTATCATA TTATGAATAA ATTACTCCTA GGCTGAATCA TTTTTGTGAA 
AAAAATAAGT TTGCTTGGGG AGAAAAAAAG TGAGTGGTAT GCTAAGTTTC ATGGGTTGTG TTTTACACTT GTGAAAATTT TAATATTTTA TAAACTTT 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTTTAATC ATCTTCTTCA GGCAGGAGGG CCTTCATGGG CTGTGTTATT AGGAAGAAGA GATGGTCTCA CTGCAAACTT GTCCGGAGCC AATTCTCTTC CCTCTCCCTT CGAAGGCCTT  AACAACATCA CATCTAAATT TGTAGCTGTC GGGCTAAATA CAACCGATGT AGTAGCCTTG TCTGGAGCAC ATACGTTTGG GCGTGGTCAA TGCGTAGCGT TCAACAATAG ACTATTCAAC  TTCAACGGGA CAGGAAACCC CGACCCGACT CTGAACTCAA CACTTCTCAG CAGTCTTCAA CAGCTATGTC CTCAAAACGG CAGCGCATCA GGGATCACCA ATCTCGATCT GAGCACACCT  GATGCGTTCG ATAAATATTA CTTCACAAAC CTTCAGAGTA ACAATGGGCT TCTTCAGTCA GACCAGGAAC TGTTCTCCAA CAGCGGTTCA GCCACCGTCC CGATTGTTAA TTCCTTTGCA  AGTAACCAAA CTCTGTTTTT TGAGGCGTTT GTTCAGTCTA TGATCAAGAT GGGGAACATA AGTCCATTGA CTGGGAATAG TGGAGAGATT AGACAAGATT GTAAGGTGGT CAATGGACAG 
TCATCAGCCA CTGAAGCAGA GGACATTCAG TTACAATCTG ACTCTGACGG ACCAGTGAGT GTAGCAGATA TGTAA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTTTAATC ATCTTCTTCA GGCAGGAGGG CCTTCATGGG CTGTGTTATT AGGAAGAAGA GATGGTCTCA CTGCAAACTT GTCCGGAGCC AATTCTCTTC CCTCTCCCTT CGAAGGCCTT  AACAACATCA CATCTAAATT TGTAGCTGTC GGGCTAAATA CAACCGATGT AGTAGCCTTG TCTGGAGCAC ATACGTTTGG GCGTGGTCAA TGCGTAGCGT TCAACAATAG ACTATTCAAC  TTCAACGGGA CAGGAAACCC CGACCCGACT CTGAACTCAA CACTTCTCAG CAGTCTTCAA CAGCTATGTC CTCAAAACGG CAGCGCATCA GGGATCACCA ATCTCGATCT GAGCACACCT  GATGCGTTCG ATAAATATTA CTTCACAAAC CTTCAGAGTA ACAATGGGCT TCTTCAGTCA GACCAGGAAC TGTTCTCCAA CAGCGGTTCA GCCACCGTCC CGATTGTTAA TTCCTTTGCA  AGTAACCAAA CTCTGTTTTT TGAGGCGTTT GTTCAGTCTA TGATCAAGAT GGGGAACATA AGTCCATTGA CTGGGAATAG TGGAGAGATT AGACAAGATT GTAAGGTGGT CAATGGACAG  TCATCAGCCA CTGAAGCAGA GGACATTCAG TTACAATCTG ACTCTGACGG ACCAGTGAGT GTAGCAGATA TGTAAACAAC GATGGGATCA GTTTCACCGT TTGTTTATCA TATTATGAAT  AAATTACTCC TAGGCTGAAT CATTTTTGTG AAAAAAATAA GTTTGCTTGG GGAGAAAAAA AGTGAGTGGT ATGCTAAGTT TCATGGGTTG TGTTTTACAC TTGTGAAAAT TTTAATATTT 
TATAAACTTT 

Retrieve as FASTA