Entry information : AhalPrx47 (Araha.4625s0002)
Entry ID 14828
Creation 2018-01-09 (Christophe Dunand)
Last sequence changes 2018-01-09 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-01-10 (Christophe Dunand)
Peroxidase information: AhalPrx47 (Araha.4625s0002)
Name (synonym) AhalPrx47 (Araha.4625s0002)
Class Class III peroxidase     [Orthogroup: Prx005]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis halleri    [TaxId: 81970 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AhalPrx47
start..stop
S start..stop
AlyPrx62 265 3e-91 1..130 1..130
BstrPrx31 251 1e-85 1..130 1..130
AtPrx62 248 3e-84 1..130 1..130
BstrPrx[P]62-1 236 1e-81 1..130 1..132
Literature and cross-references AhalPrx47 (Araha.4625s0002)
Protein sequence: AhalPrx47 (Araha.4625s0002)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   130 (108)
PWM (Da):   %s   13592.68 (11126.4) Transmb domain:   %s   i2-24o
PI (pH):   %s   5.54 (4.96) Peptide Signal:   %s   cut: 23 range:23-130
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGLVRFFCSF LVFLSCLIAV YGQGTRIGFY STTCPNAETI VQTTVASHFG SDPRVAPGLL RMHNHDCFVQ GCDGSVLLSG PNSERTAGAN VNLRGFEVID DAKTQLEAAC PGVVSCADIL 
ALAARDSVAL 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 3'end is missing due to scaffold border.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACTAACTCGA AACACACTTG AGACCTTATC TAAAACACAA ACCAACAAAA GGAAAAAATG GGTTTGGTCC GATTCTTTTG TTCGTTCCTA GTCTTCCTTA GTTGTCTCAT CGCGGTTTAT  GGTCAAGGTA CGAGGATCGG GTTCTACTCG ACCACGTGCC CCAATGCCGA GACGATTGTT CAGACCACTG TGGCATCTCA CTTTGGTTCA GATCCAAGGG TTGCACCGGG GTTACTGAGA  ATGCACAACC ATGATTGCTT TGTCCAAGGT TGTGATGGTT CAGTGCTTTT ATCAGGACCT AACTCTGAAA GAACCGCTGG CGCAAACGTT AACCTTCGTG GTTTTGAGGT CATTGACGAT 
GCCAAGACGC AGCTCGAGGC GGCATGTCCT GGTGTTGTCT CTTGTGCTGA TATCTTAGCC TTGGCGGCTC GTGATTCCGT TGCTCTC 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGTTTGG TCCGATTCTT TTGTTCGTTC CTAGTCTTCC TTAGTTGTCT CATCGCGGTT TATGGTCAAG GTACGAGGAT CGGGTTCTAC TCGACCACGT GCCCCAATGC CGAGACGATT  GTTCAGACCA CTGTGGCATC TCACTTTGGT TCAGATCCAA GGGTTGCACC GGGGTTACTG AGAATGCACA ACCATGATTG CTTTGTCCAA GGTTGTGATG GTTCAGTGCT TTTATCAGGA  CCTAACTCTG AAAGAACCGC TGGCGCAAAC GTTAACCTTC GTGGTTTTGA GGTCATTGAC GATGCCAAGA CGCAGCTCGA GGCGGCATGT CCTGGTGTTG TCTCTTGTGC TGATATCTTA 
GCCTTGGCGG CTCGTGATTC CGTTGCTCTC 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACTAACTCGA AACACACTTG AGACCTTATC TAAAACACAA ACCAACAAAA GGAAAAAATG GGTTTGGTCC GATTCTTTTG TTCGTTCCTA GTCTTCCTTA GTTGTCTCAT CGCGGTTTAT  GGTCAAGGTA CGAGGATCGG GTTCTACTCG ACCACGTGCC CCAATGCCGA GACGATTGTT CAGACCACTG TGGCATCTCA CTTTGGTTCA GATCCAAGGG TTGCACCGGG GTTACTGAGA  ATGCACAACC ATGATTGCTT TGTCCAAGGT TGTGATGGTT CAGTGCTTTT ATCAGGACCT AACTCTGAAA GAACCGCTGG CGCAAACGTT AACCTTCGTG GTTTTGAGGT CATTGACGAT 
GCCAAGACGC AGCTCGAGGC GGCATGTCCT GGTGTTGTCT CTTGTGCTGA TATCTTAGCC TTGGCGGCTC GTGATTCCGT TGCTCTC 

Retrieve as FASTA