Entry information : AhalPrx52 (Araha.52791s0002)
Entry ID 14833
Creation 2018-01-09 (Christophe Dunand)
Last sequence changes 2018-01-09 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-01-10 (Christophe Dunand)
Peroxidase information: AhalPrx52 (Araha.52791s0002)
Name (synonym) AhalPrx52 (Araha.52791s0002)
Class Class III peroxidase     [Orthogroup: Prx034]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis halleri    [TaxId: 81970 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AhalPrx52
start..stop
S start..stop
AlyPrx[P]19 291 4e-103 1..156 1..156
AtPrx19 275 5e-94 1..157 1..155
CrubPrx59 275 6e-94 1..157 1..156
CagraPrx63 274 1e-93 1..157 1..156
Literature and cross-references AhalPrx52 (Araha.52791s0002)
Protein sequence: AhalPrx52 (Araha.52791s0002)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   170 (144)
PWM (Da):   %s   18955.1 (15976.5)  
PI (pH):   %s   7.5 (7.46) Peptide Signal:   %s   cut: 27 range:27-170
Sequence
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MHVLSLSLSS IFFYLFLTST IPISPAKLTI SQPPALRRLH HIELSGDYYS KKCPQLENLV GSVTSQRFKE APISAPATIR LFFHDCFVEG CDGSILIETK KGSKKLAERE AYENKELREE 
GFESIIKAKA LVESHCPSLV SCSDILAIAA RDFIHLVIPT SILFLIVLFI * 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 3'end is missing due to N in the sequence.
DNA
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TGTCACTCTA CTTGTTTGTC ACTTATATGA GCATTGACTT AGGTTGTTTT TTTGTCATTA TTTTGAACAG TACCAAAAAA CTGTAAACTA TTTATTAGTT TGTCCAGACG CACATCTCAC  AACCCCACCA TGCATGTCCT ATCTCTTTCT TTATCCTCAA TATTTTTTTA TCTCTTCCTC ACATCAACCA TTCCTATTTC TCCGGCGAAA CTAACAATCT CTCAGCCTCC GGCACTAAGG  CGCCTCCACC ACATAGAGCT CTCCGGCGAT TACTACTCCA AGAAATGTCC TCAGCTCGAA AATCTCGTCG GTTCCGTCAC TTCTCAGCGG TTCAAAGAAG CCCCCATCTC AGCTCCAGCC  ACCATTCGCC TCTTCTTTCA CGACTGCTTC GTTGAGGTTT AATTCTACCA AATTTTTACA TTATTTTTCT TACTCCAGCG CACTATAGCA TTAACCATAA ACAACAACAC GCATTTTAGC  ATTAGTAnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnGTAG TTTAGCAAAC AACAGTCAAG ATTCGGTGCA TTTTAGCGAA AAAACTCAAA  ACAGTATTTT GGCCTGCATC GTTGTTTGTT TAACAAATAA CACTACACAT CTCATGCATG AAAAACTAAT AAATTATGGA CTATGATTAT TGATAATCAA CATAAGTTGA AATTGAAATT  TTGAAGGGTT GTGATGGGTC GATATTGATA GAAACAAAGA AAGGAAGCAA GAAATTAGCA GAAAGAGAAG CATATGAGAA TAAAGAATTG AGAGAAGAAG GATTCGAGAG TATTATTAAG  GCAAAGGCAT TGGTCGAGTC TCATTGCCCT TCTCTCGTCT CTTGCTCTGA TATTCTCGCT ATCGCCGCTC GAGATTTCAT CCACCTGGTA ATCCCAACTT CAATCCTATT TCTAATTGTT 
CTATTCATAT GA 

Retrieve as FASTA  
CDS
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ATGCATGTCC TATCTCTTTC TTTATCCTCA ATATTTTTTT ATCTCTTCCT CACATCAACC ATTCCTATTT CTCCGGCGAA ACTAACAATC TCTCAGCCTC CGGCACTAAG GCGCCTCCAC  CACATAGAGC TCTCCGGCGA TTACTACTCC AAGAAATGTC CTCAGCTCGA AAATCTCGTC GGTTCCGTCA CTTCTCAGCG GTTCAAAGAA GCCCCCATCT CAGCTCCAGC CACCATTCGC  CTCTTCTTTC ACGACTGCTT CGTTGAGGGT TGTGATGGGT CGATATTGAT AGAAACAAAG AAAGGAAGCA AGAAATTAGC AGAAAGAGAA GCATATGAGA ATAAAGAATT GAGAGAAGAA  GGATTCGAGA GTATTATTAA GGCAAAGGCA TTGGTCGAGT CTCATTGCCC TTCTCTCGTC TCTTGCTCTG ATATTCTCGC TATCGCCGCT CGAGATTTCA TCCACCTGGT AATCCCAACT 
TCAATCCTAT TTCTAATTGT TCTATTCATA TGA 

Retrieve as FASTA  
cDNA
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TGTCACTCTA CTTGTTTGTC ACTTATATGA GCATTGACTT AGGTTGTTTT TTTGTCATTA TTTTGAACAG TACCAAAAAA CTGTAAACTA TTTATTAGTT TGTCCAGACG CACATCTCAC  AACCCCACCA TGCATGTCCT ATCTCTTTCT TTATCCTCAA TATTTTTTTA TCTCTTCCTC ACATCAACCA TTCCTATTTC TCCGGCGAAA CTAACAATCT CTCAGCCTCC GGCACTAAGG  CGCCTCCACC ACATAGAGCT CTCCGGCGAT TACTACTCCA AGAAATGTCC TCAGCTCGAA AATCTCGTCG GTTCCGTCAC TTCTCAGCGG TTCAAAGAAG CCCCCATCTC AGCTCCAGCC  ACCATTCGCC TCTTCTTTCA CGACTGCTTC GTTGAGGGTT GTGATGGGTC GATATTGATA GAAACAAAGA AAGGAAGCAA GAAATTAGCA GAAAGAGAAG CATATGAGAA TAAAGAATTG  AGAGAAGAAG GATTCGAGAG TATTATTAAG GCAAAGGCAT TGGTCGAGTC TCATTGCCCT TCTCTCGTCT CTTGCTCTGA TATTCTCGCT ATCGCCGCTC GAGATTTCAT CCACCTGGTA 
ATCCCAACTT CAATCCTATT TCTAATTGTT CTATTCATAT GA 

Retrieve as FASTA