Entry information : AhalPrx54 (Araha.5344s0004)
Entry ID 14835
Creation 2018-01-09 (Christophe Dunand)
Last sequence changes 2018-01-09 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-01-10 (Christophe Dunand)
Peroxidase information: AhalPrx54 (Araha.5344s0004)
Name (synonym) AhalPrx54 (Araha.5344s0004)
Class Class III peroxidase     [Orthogroup: Prx031]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis halleri    [TaxId: 81970 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AhalPrx54
start..stop
S start..stop
AlyPrx07 629 0 1..307 43..349
CrubPrx42 602 0 1..307 46..352
BstrPrx10 602 0 1..307 45..351
CagraPrx71 602 0 1..307 46..352
Literature and cross-references AhalPrx54 (Araha.5344s0004)
Protein sequence: AhalPrx54 (Araha.5344s0004)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   307
PWM (Da):   %s   34414.39  
PI (pH):   %s   7.96
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
SWFPLDNLLS LNYYDKICPD FEKIVDRKVR EWTKSDSSLG PALLRLIFHD CGVTGCDASV LLDYEGTERR SPASKSLRGF ELIDDIKSEM EKSCPGLVSC ADILTSASRA ATVQLGGPYW  PNVYGRRDSK NSYARDVEKV PSGRRDVTAL LETFQSYGLN ILDLVVLSGA HTIGKAYCGT IQSRLYNYNA TNGSDPSIDP KYADYLRRRC RWASETVELD AVTPAVFDNQ YYINLQKHMG 
VLSTDQELVK DPRTAPLVKA FAEQPPQMFR QQFAVSMAKL VNVGVLTGED RIGEIRKVCS KSNSRRY* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 5'end (short part of the exon 1) is missing due to N in the sequence.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCATGGTTTC CTTTGGACAA TCTATTATCG TTGAATTACT ATGATAAGAT TTGTCCAGAT TTTGAGAAAA TCGTTGATAG GAAAGTGAGG GAATGGACTA AGAGTGACTC TTCCCTTGGT  CCCGCCCTCC TCCGCCTTAT CTTCCACGAT TGTGGTGTCA CGGTATTGCA ATTATATCTT CTTCCTTAAA TATTTATTTA ACATTAATCG TTCAATAATT GCTTAGTCTT TATTTTAACA  TTTCTCCATG CTATATAGCC AATGTTTTGA TTCATAGATG GTTTACATTG TTCTAAAAAT GGGTTTCACT ATTACTCTAT TATATTAGAG ATGAGAATTG TTCTTCCGTT TATCTAGACC  ATACTTATAA GTTAGAACAT TAATAGTAAA TAGATATAAG TTTCTTAATA TTGAAGACGG ACTTACGCAA TTTATTCTAT GCATAAACGC ACCTTAGTGT TTTGCGCATA TCTAATATAA  TTAAGCATTT CTAAATATCA CAACTTTCAG GGATGTGATG CGTCCGTTCT TCTAGACTAC GAAGGGACAG AGAGAAGATC TCCGGCGAGC AAAAGCCTAA GAGGCTTCGA GCTAATCGAC  GATATCAAGT CCGAGATGGA GAAATCTTGC CCCGGATTAG TCTCATGCGC TGACATCCTA ACATCAGCTA GTCGTGCCGC CACCGTCCAA CTCGGTGGTC CTTACTGGCC CAACGTCTAC  GGTCGTCGTG ACTCCAAAAA CTCTTACGCT AGAGACGTCG AGAAAGTCCC TTCAGGCCGC CGTGATGTTA CCGCTCTTCT CGAAACGTTT CAGTCGTACG GTCTCAACAT CCTCGACCTA  GTTGTCCTCT CCGGTGCCCA CACCATCGGA AAAGCCTACT GTGGTACCAT CCAGTCGAGG CTTTACAACT ACAACGCAAC CAATGGTTCA GATCCGTCGA TTGACCCAAA ATACGCAGAT  TACTTGCGAC GCAGGTGTCG CTGGGCTTCT GAGACCGTCG AGCTTGACGC CGTAACTCCA GCAGTGTTCG ATAATCAGTA CTACATTAAT CTTCAGAAGC ATATGGGAGT TTTGTCGACT  GATCAGGAGC TTGTTAAGGA CCCAAGGACC GCTCCACTTG TAAAGGCTTT CGCGGAACAA CCGCCTCAGA TGTTCAGACA ACAGTTTGCT GTGTCAATGG CTAAGCTGGT CAATGTTGGT  GTCCTCACTG GTGAAGATCG TATCGGAGAG ATCAGGAAGG TTTGCAGCAA ATCTAACTCC AGACGTTACT AATAACAATT ACTATCCCTC ATATGAGTTT TCTACAAGAA CCTTCTGTTC 
CTTGGTGTAA TTTCTTGTTT GGTTTTAATT TTGAGCTCTT TTCAATCGCA ATTTGTATTA TGAACAAAAA TGTGAATCTT GTTTTATACT GAAAATTCTT TTCGCTACA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCATGGTTTC CTTTGGACAA TCTATTATCG TTGAATTACT ATGATAAGAT TTGTCCAGAT TTTGAGAAAA TCGTTGATAG GAAAGTGAGG GAATGGACTA AGAGTGACTC TTCCCTTGGT  CCCGCCCTCC TCCGCCTTAT CTTCCACGAT TGTGGTGTCA CGGGATGTGA TGCGTCCGTT CTTCTAGACT ACGAAGGGAC AGAGAGAAGA TCTCCGGCGA GCAAAAGCCT AAGAGGCTTC  GAGCTAATCG ACGATATCAA GTCCGAGATG GAGAAATCTT GCCCCGGATT AGTCTCATGC GCTGACATCC TAACATCAGC TAGTCGTGCC GCCACCGTCC AACTCGGTGG TCCTTACTGG  CCCAACGTCT ACGGTCGTCG TGACTCCAAA AACTCTTACG CTAGAGACGT CGAGAAAGTC CCTTCAGGCC GCCGTGATGT TACCGCTCTT CTCGAAACGT TTCAGTCGTA CGGTCTCAAC  ATCCTCGACC TAGTTGTCCT CTCCGGTGCC CACACCATCG GAAAAGCCTA CTGTGGTACC ATCCAGTCGA GGCTTTACAA CTACAACGCA ACCAATGGTT CAGATCCGTC GATTGACCCA  AAATACGCAG ATTACTTGCG ACGCAGGTGT CGCTGGGCTT CTGAGACCGT CGAGCTTGAC GCCGTAACTC CAGCAGTGTT CGATAATCAG TACTACATTA ATCTTCAGAA GCATATGGGA  GTTTTGTCGA CTGATCAGGA GCTTGTTAAG GACCCAAGGA CCGCTCCACT TGTAAAGGCT TTCGCGGAAC AACCGCCTCA GATGTTCAGA CAACAGTTTG CTGTGTCAAT GGCTAAGCTG 
GTCAATGTTG GTGTCCTCAC TGGTGAAGAT CGTATCGGAG AGATCAGGAA GGTTTGCAGC AAATCTAACT CCAGACGTTA CTAA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCATGGTTTC CTTTGGACAA TCTATTATCG TTGAATTACT ATGATAAGAT TTGTCCAGAT TTTGAGAAAA TCGTTGATAG GAAAGTGAGG GAATGGACTA AGAGTGACTC TTCCCTTGGT  CCCGCCCTCC TCCGCCTTAT CTTCCACGAT TGTGGTGTCA CGGGATGTGA TGCGTCCGTT CTTCTAGACT ACGAAGGGAC AGAGAGAAGA TCTCCGGCGA GCAAAAGCCT AAGAGGCTTC  GAGCTAATCG ACGATATCAA GTCCGAGATG GAGAAATCTT GCCCCGGATT AGTCTCATGC GCTGACATCC TAACATCAGC TAGTCGTGCC GCCACCGTCC AACTCGGTGG TCCTTACTGG  CCCAACGTCT ACGGTCGTCG TGACTCCAAA AACTCTTACG CTAGAGACGT CGAGAAAGTC CCTTCAGGCC GCCGTGATGT TACCGCTCTT CTCGAAACGT TTCAGTCGTA CGGTCTCAAC  ATCCTCGACC TAGTTGTCCT CTCCGGTGCC CACACCATCG GAAAAGCCTA CTGTGGTACC ATCCAGTCGA GGCTTTACAA CTACAACGCA ACCAATGGTT CAGATCCGTC GATTGACCCA  AAATACGCAG ATTACTTGCG ACGCAGGTGT CGCTGGGCTT CTGAGACCGT CGAGCTTGAC GCCGTAACTC CAGCAGTGTT CGATAATCAG TACTACATTA ATCTTCAGAA GCATATGGGA  GTTTTGTCGA CTGATCAGGA GCTTGTTAAG GACCCAAGGA CCGCTCCACT TGTAAAGGCT TTCGCGGAAC AACCGCCTCA GATGTTCAGA CAACAGTTTG CTGTGTCAAT GGCTAAGCTG  GTCAATGTTG GTGTCCTCAC TGGTGAAGAT CGTATCGGAG AGATCAGGAA GGTTTGCAGC AAATCTAACT CCAGACGTTA CTAATAACAA TTACTATCCC TCATATGAGT TTTCTACAAG  AACCTTCTGT TCCTTGGTGT AATTTCTTGT TTGGTTTTAA TTTTGAGCTC TTTTCAATCG CAATTTGTAT TATGAACAAA AATGTGAATC TTGTTTTATA CTGAAAATTC TTTTCGCTAC 

Retrieve as FASTA