Entry information : AhalPrx[P]59 (Araha.2549s0013)
Entry ID 14840
Creation 2018-01-09 (Christophe Dunand)
Last sequence changes 2018-01-09 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2018-01-24 (Christophe Dunand)
Peroxidase information: AhalPrx[P]59 (Araha.2549s0013)
Name (synonym) AhalPrx[P]59 (Araha.2549s0013)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis halleri    [TaxId: 81970 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AhalPrx[P]59
start..stop
S start..stop
CrubPrx76 96 2e-26 2..66 246..319
CroPrx25 85 4e-22 3..65 256..327
EglPrx134 84 7e-22 2..65 251..323
CpapPrx52 84 1e-21 2..65 247..319
Literature and cross-references AhalPrx[P]59 (Araha.2549s0013)
Protein sequence: AhalPrx[P]59 (Araha.2549s0013)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   67
PWM (Da):   %s   7668.85  
PI (pH):   %s   10.11
Sequence
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Send to Peroxiscan
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MDSSRTFDNA YYCNMEERKG VLDSDQALYT DPRSQPLVFE GAFARSMIKL GRIGVKTGRN GNIRRRI* 

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Remarks Pseudogene from genomic. Only short part of the last exon has been found. Highly divergent from A.thaliana ortholog!!!
DNA
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ATGGATTCTT CCAGGACCTT CGACAACGCG TACTATTGCA ATATGGAAGA GCGGAAAGGC GTTCTTGACT CCGACCAAGC GCTATACACT GACCCGCGCT CACAGCCATT AGTTGAAGAA 
CTGGCCAGTA AGGCAGTAAT GGTCAGGTTT TCGAAGGAGC TTTCGCACGC TCAATGATTA AGTTGGGCAG AATCGGCGTG AAAACGGGCC GCAACGGCAA TATCCGCCGT CGCATTTAA 

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CDS
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ATGGATTCTT CCAGGACCTT CGACAACGCG TACTATTGCA ATATGGAAGA GCGGAAAGGC GTTCTTGACT CCGACCAAGC GCTATACACT GACCCGCGCT CACAGCCATT AGTTTTCGAA 
GGAGCTTTCG CACGCTCAAT GATTAAGTTG GGCAGAATCG GCGTGAAAAC GGGCCGCAAC GGCAATATCC GCCGTCGCAT TTAA 

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cDNA
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ATGGATTCTT CCAGGACCTT CGACAACGCG TACTATTGCA ATATGGAAGA GCGGAAAGGC GTTCTTGACT CCGACCAAGC GCTATACACT GACCCGCGCT CACAGCCATT AGTTTTCGAA 
GGAGCTTTCG CACGCTCAAT GATTAAGTTG GGCAGAATCG GCGTGAAAAC GGGCCGCAAC GGCAATATCC GCCGTCGCAT TTAA 

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