Entry information : GhPrx12
Entry ID 151
Creation 2008-12-01 (Christophe Dunand)
Last sequence changes 2008-12-01 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2008-12-01 (Christophe Dunand)
Peroxidase information: GhPrx12
Name GhPrx12
Class Class III peroxidase     [Orthogroup: Prx030]*
Taxonomy Eukaryota Viridiplantae Streptophyta Malvaceae Gossypium
Organism Gossypium hirsutum (upland cotton)    [TaxId: 3635 ]
Cellular localisation N/D
Tissue types Boll fibers (cotton)
Hypocotyls
Ovule
Inducers Abscission
Fusarium infection
Repressor N/D
Best BLASTp hits
Perox score E-value GhPrx12
start..stop
S start..stop
PtPrx08 463 2e-166 4..279 6..281
MePrx06 455 3e-163 28..279 29..280
PtrePrx03 452 2e-162 7..279 8..280
CsPrx04 444 1e-158 1..279 1..279
Literature and cross-references GhPrx12
Literature Dowd,C., Wilson,I. and McFadden,H. Gene expression profile changes in cotton root and hypocotyl tissues in response to infection with Fusarium oxysporum f.sp.vasinfectum. MPMI 17 (6), 654-667 (2004)
EST ref. GenBank:   CD486634 [5' end]   DT562558 [Fragment]
Cluster/Prediction ref. UniGene:   Ghi.6564
Protein sequence: GhPrx12
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   280 (251)
PWM (Da):   %s   31371.94 (28098.2)  
PI (pH):   %s   7.03 (6.39) Peptide Signal:   %s   cut: 30 range:30-280
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MMAIKSHHCC LSFIFLLLPL LLQLHSVKGN LQLNYYAQSC PNAEEIIKQQ VIKLYNKHGN TAVSWVRNLF HDCMVKSCDA SLLLETVNGI ESEQKSDRSF GMRNFKYVKT IKDALEQECP  GTVSCADIVS LSARDGIVLL GGPRIEMKTG RKDSKRSYLS EVENTIPNHN DSMELVLSRF QSIGIDTQGV VALLGAHSVG RVHCVNLVHR LYPTVDPTLE PDYAEYLKGR CPTPDPDPEA 
VLYSRNDRET PMILDNMYYK NLLKHKGLLV IDQQLTSDPT 

Retrieve as FASTA  
Remarks Partial sequence from 4 ESTs. Cultivar="Texas Maker-1 (TM-1)". Short 3' end is missing.