Entry information : LePrx78 (Solyc05g050890.1.1)
Entry ID 15364
Creation 2018-07-25 (Christophe Dunand)
Last sequence changes 2018-07-25 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Peroxidase information: LePrx78 (Solyc05g050890.1.1)
Name (synonym) LePrx78 (Solyc05g050890.1.1)
Class Class III peroxidase     [Orthogroup: Prx010]*
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Solanum
Organism Lycopersicon esculentum (Tomato)    [TaxId: 4081 ]
Cellular localisation N/D
Tissue type
Inducer
Repressor
Best BLASTp hits
Perox score E-value LePrx78
start..stop
S start..stop
LePrx79 364 2e-131 1..183 1..183
LePrx71 349 2e-123 1..183 135..317
EgrPrx25 316 3e-110 1..183 137..319
EgrPrx24 315 6e-110 1..183 136..318
Literature and cross-references LePrx78 (Solyc05g050890.1.1)
Cluster/Prediction ref. Phytozome Gene 12:   36144388 [3' end]
Protein sequence: LePrx78 (Solyc05g050890.1.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   183
PWM (Da):   %s   19481.56  
PI (pH):   %s   8.85
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
LGGPSWTVLL GRRDSTTASL STANSDIPAP TLNLSSLISS FSNKGFSSRE MVALSGSHTI GQARCTTFRD RLYNETDINA SFATTVKSNC PQSGSDNDIS PLDATSPTTF DNIYYKNLRI 
QKGLLHSDQQ LSSGGSTDSI VNTYSSNSAT FFTDFANAMV KMGNLSPLTG SNGQIRKNCR KIN 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Exons 1 and 2 are missing due to N in the sequence. Frame shifts in the exon 3. No EST. ch05:61118362..61118848
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CTTGGTGGAC CTAGTTGGAC TGTATTACTC GGAAGAAGAG ACTCAACGAC TGCAAGTTTG AGTACCGCAA ATAGTGACAT ACCTGCACCA ACTTTAAATC TTAGCAGTCT TATTTCTTCC  TTTTCTAATA AAGGTTTCAG TTCCAGAGAA ATGGTCGCTC TCTCAGGTTT TTTTTTTACA TTAAATATTT TTTTTAAATC AAGTCACGAG ATTTGCGTAC GCTAAATTGA TTTTTTTTTG  GGATTGTACA GGTTCTCACA CGATAGGACA AGCAAGATGC ACTACTTTTC GCGATCGTCT CTATAACGAA ACTGATATAA ATGCTTCATT CGCTACAACG GTTAAATCGA ACTGTCCACA  AAGTGGAAGT GACAATGACA TCTCTCCATT AGACGCCACA AGCCCAACCA CATTTGATAA TATTTACTAT AAGAATCTGC GAATTCAAAA GGGTCTTCTT CATTCTGACC AACAACTCTC  TAGTGGAGGC TCAACAGACT CTATTGTTAA CACTTATAGC TCTAATTCAG CCACTTTCTT CACTGATTTT GCTAACGCCA TGGTGAAAAT GGGTAATCTT AGCCCACTTA CTGGCTCAAA 
TGGTCAAATC CGCAAAAATT GCAGGAAGAT CAATTAA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CTTGGTGGAC CTAGTTGGAC TGTATTACTC GGAAGAAGAG ACTCAACGAC TGCAAGTTTG AGTACCGCAA ATAGTGACAT ACCTGCACCA ACTTTAAATC TTAGCAGTCT TATTTCTTCC  TTTTCTAATA AAGGTTTCAG TTCCAGAGAA ATGGTCGCTC TCTCAGGTTC TCACACGATA GGACAAGCAA GATGCACTAC TTTTCGCGAT CGTCTCTATA ACGAAACTGA TATAAATGCT  TCATTCGCTA CAACGGTTAA ATCGAACTGT CCACAAAGTG GAAGTGACAA TGACATCTCT CCATTAGACG CCACAAGCCC AACCACATTT GATAATATTT ACTATAAGAA TCTGCGAATT  CAAAAGGGTC TTCTTCATTC TGACCAACAA CTCTCTAGTG GAGGCTCAAC AGACTCTATT GTTAACACTT ATAGCTCTAA TTCAGCCACT TTCTTCACTG ATTTTGCTAA CGCCATGGTG 
AAAATGGGTA ATCTTAGCCC ACTTACTGGC TCAAATGGTC AAATCCGCAA AAATTGCAGG AAGATCAATT AA 

Retrieve as FASTA