Entry information : SaPrx20
Entry ID 15989
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-12-01 (Christophe Dunand)
Peroxidase information: SaPrx20
Name SaPrx20
Class Class III peroxidase    [Orthogroup: Prx027]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaPrx20
start..stop
S start..stop
MguPrx10 489 8e-176 21..338 4..329
InPrx02 436 1e-154 1..338 1..331
VvPrx19 424 5e-150 1..338 1..330
LePrx49 420 3e-148 4..338 5..340
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 235301..235552 252 N° 2 235007..235198 192 N° 3 234601..234766 166 N° 4 234167..234570 404
complement(join(234167..234570,234601..234766,235007..235198,235301..235552))


exon

Literature and cross-references SaPrx20
Protein ref. GenBank:   GER43981.1
Protein sequence: SaPrx20
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   338
PWM (Da):   %s   36063.72  
PI (pH):   %s   4.16
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGIYLATIYL ILLNFSASFA NITNTTVSNE AEACVDANIV LSFNFYINSC PEAEPIVFSW VEKALSDDPR MAASLLRLHF HDCFGCDASV LLDDTLGFVG EKTAAPNANS LRGFEVIDAI  KADLEYVCPQ TVSCADILAI AARDSVVLSG GPGWEVEMGR KDSVGANKAA ANSNIPAPNS DLSTLLSKFQ NLGLSLQDMV ALSGAHTMGK ARCSTFAARL NNNNNTNDII SDNAPNVNLE 
FLQSLEQLCS QPSAGSTLAD LDHSTPTTFD NQYYLNLLSG EGLLGSDQEL LKEGPRGIIE LYADDVDVFF EDFKKAMLKM GSLLGSGGAP GEIRRNCR 

Retrieve as FASTA  
Remarks complete sequence from genomic
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGCATAT ACTTAGCCAC TATCTACTTG ATCTTGCTCA ACTTTTCAGC TTCGTTTGCC AACATCACAA ACACGACTGT ATCCAACGAG GCAGAAGCAT GTGTCGATGC TAACATCGTT  TTAAGCTTTA ATTTCTACAT TAACAGTTGC CCTGAAGCCG AACCAATCGT TTTCTCTTGG GTTGAAAAAG CGCTTTCCGA TGACCCGAGA ATGGCTGCCT CTTTGCTTCG TCTCCATTTT  CACGATTGCT TTGGATGTGA TGCGTCGGTG TTACTCGACG ACACGTTGGG TTTCGTTGGG GAGAAAACCG CGGCTCCAAA CGCGAACTCC TTAAGGGGAT TTGAAGTAAT AGATGCCATA  AAAGCTGATC TTGAATATGT CTGCCCTCAG ACAGTGTCTT GTGCTGATAT TCTTGCTATT GCAGCTAGAG ATTCTGTTGT GCTGTCAGGT GGGCCTGGAT GGGAAGTGGA AATGGGCAGG  AAAGATAGTG TGGGGGCCAA CAAAGCCGCA GCCAACAGCA ATATACCTGC TCCTAATTCT GATTTATCAA CATTGTTGTC AAAATTCCAG AATCTTGGCC TGTCACTCCA AGACATGGTT  GCACTTTCTG GCGCGCACAC CATGGGAAAA GCCCGATGCT CGACATTTGC CGCTCGTCTA AACAACAACA ACAACACGAA CGACATTATT TCCGATAATG CCCCTAACGT CAACCTCGAA  TTCCTACAGT CACTCGAGCA GCTATGCTCG CAACCCAGTG CTGGCTCGAC CCTTGCCGAC CTCGACCACA GCACGCCCAC GACTTTCGAC AATCAATATT ACCTCAATCT TCTCTCAGGC  GAAGGCCTTC TTGGGTCCGA CCAGGAGTTG CTGAAGGAGG GCCCGCGTGG CATAATCGAG CTCTACGCGG ATGATGTGGA CGTGTTTTTC GAGGATTTTA AGAAGGCTAT GCTGAAAATG 
GGGAGCCTGC TGGGGAGTGG AGGGGCGCCG GGAGAAATTC GTAGAAATTG TCGG 

Retrieve as FASTA