Entry information : SaPrx50
Entry ID 16017
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2019-12-05 (Christophe Dunand)
Peroxidase information: SaPrx50
Name SaPrx50
Class Class III peroxidase    [Orthogroup: Prx019]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaPrx50
start..stop
S start..stop
PpePrx17 426 1e-152 1..253 71..326
MguPrx31 419 2e-149 1..253 75..330
StPrx18 409 1e-145 1..253 77..332
LePrx48 409 1e-145 1..253 74..329
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1059065..1059262 198 N° 2 1058514..1058679 166 N° 3 1057086..1057483 398  
complement(join(1057086..1057483,1058514..1058679,1059065..1059262))


exon

Literature and cross-references SaPrx50
Protein ref. GenBank:   GER52024.1
Protein sequence: SaPrx50
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   253
PWM (Da):   %s   27139.38  
PI (pH):   %s   8.38
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCDASIMLAS PNGQAEKDHP DNLSLAGDGF DTVVRAKAAV DNDPRCRNRV SCADILALAT RDVVNMTGGP SYTVELGRRD GRISTAASVQ RRLPGPGFNL DQLSTMFSRN GLTITDLVAL  SGAHTLGFSH CSRFSNRIFP ASRTDPTLNP QYAAQLRQMC PVNVDPRVAI NMDPTTPNTF DNAYFRNLQS GRGLFSSDEV LFTDNRTRAT VNTFAASNGA FFGAFAQAMT RLGRVGVLTG 
TQGEIRMDCT RPN 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Exon 1 is missing due to N in the sequence.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGATGTGACG CGTCGATTAT GCTAGCGTCG CCCAACGGTC AAGCAGAGAA GGACCATCCA GACAACCTCT CGTTAGCCGG AGATGGTTTC GACACGGTGG TTAGGGCAAA GGCGGCCGTG  GACAACGACC CGAGGTGTCG GAATCGGGTT TCGTGTGCCG ATATATTAGC ATTGGCCACT AGGGATGTTG TCAACATGAC TGGAGGACCG TCTTACACAG TCGAACTAGG AAGACGAGAC  GGGAGAATTT CGACTGCGGC AAGCGTCCAG CGAAGGCTTC CAGGGCCAGG CTTCAATTTG GACCAGCTTA GTACCATGTT TTCTAGAAAT GGTCTCACCA TCACTGATTT GGTTGCTTTA  TCAGGCGCGC ACACATTGGG CTTCTCCCAC TGCAGCCGGT TCTCGAACCG AATCTTCCCG GCGAGCAGGA CCGACCCGAC CCTGAACCCG CAGTACGCCG CGCAGCTGCG GCAGATGTGC  CCGGTCAACG TCGACCCGCG GGTCGCGATC AACATGGACC CGACCACCCC CAACACCTTC GACAACGCCT ACTTCCGGAA TCTCCAGTCG GGTCGGGGCC TCTTCAGCTC CGACGAGGTG  CTATTCACGG ACAACCGGAC CCGGGCCACC GTCAACACCT TCGCTGCCAG CAACGGGGCG TTTTTCGGGG CGTTCGCCCA GGCCATGACC CGGCTGGGTC GGGTCGGGGT GCTCACCGGG 
ACCCAGGGCG AGATTAGGAT GGATTGTACC CGGCCCAATT GA 

Retrieve as FASTA