Entry information : SaAPx01
Entry ID 16030
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-12-10 (Christophe Dunand)
Peroxidase information: SaAPx01
Name SaAPx01
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaAPx01
start..stop
S start..stop
SaAPx06 524 0 1..290 1..287
MguAPx01 490 1e-177 1..291 1..288
NtAPx05-1A 484 3e-175 1..291 1..287
HaAPx03 482 1e-174 1..291 1..285
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2028697..2028809 113 N° 2 2028525..2028658 134 N° 3 2027746..2027795 50 N° 4 2027246..2027311 66
N° 5 2027027..2027075 49 N° 6 2026600..2026682 83 N° 7 2026339..2026418 80 N° 8 2026156..2026258 103
N° 9 2025053..2025250 198  
complement(join(2025053..2025250,2026156..2026258,2026339..2026418,2026600..2026 682,2027027..2027075,2027246..2027311,2027746..2027795,2028525..2028658,2028697. .2028809))


exon

Literature and cross-references SaAPx01
Protein ref. GenBank:   GER42335.1
Protein sequence: SaAPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   291
PWM (Da):   %s   31903.45  
PI (pH):   %s   6.79
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAKVIIDAEY LKEIERARRE LRALIASKNC APIMLRLAWH DAGTYDVNSK TGGPNGSIRN EEECAHGANN GLKIALEFCG KLEQVRSKCP RITFADLYQL AGVVAVEVTG GPTIEFVPGR  KDSKISPKEG RLPNANEGVP HLREVFYRMG LSDKDIVALS GGHTLGRAHP ERSGFDGPWT AEPLKFDNSY FKELLKGENE GLLKLPTDVA LLDDPEFKSY VELYAKDEEA FFKDYAESHK 
KLSELGFNPT QTGAKAIVQN GTILAQSAVG VAVAAAVVIF SYFYEVRKKM K 

Retrieve as FASTA  
Remarks
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGAAAG TCATCATCGA CGCGGAATAC CTCAAGGAGA TCGAGAGAGC CCGTCGTGAG CTTCGCGCGC TCATCGCCAG CAAAAACTGT GCACCTATTA TGCTGCGTTT GGCGTGGCAT  GACGCGGGGA CGTATGACGT GAACTCGAAG ACTGGAGGTC CGAATGGTTC GATTCGAAAT GAAGAGGAGT GCGCTCACGG AGCTAACAAT GGCTTGAAAA TCGCGCTCGA GTTTTGTGGT  AAATTAGAAC AAGTGAGGTC TAAATGCCCA AGAATTACAT TTGCAGATTT GTATCAGCTT GCAGGTGTTG TTGCAGTTGA AGTTACGGGA GGCCCTACAA TTGAATTTGT TCCTGGTAGA  AAGGATTCAA AGATTTCTCC AAAGGAAGGA CGACTTCCAA ATGCTAATGA AGGAGTGCCA CACCTTCGGG AGGTGTTCTA TCGTATGGGC TTGTCTGATA AAGATATAGT GGCACTGTCG  GGGGGCCATA CCCTGGGAAG GGCACATCCT GAGAGATCTG GTTTTGATGG TCCTTGGACT GCAGAGCCAT TGAAGTTTGA TAATTCATAC TTTAAGGAAT TGCTTAAGGG GGAAAATGAG  GGCTTGCTAA AACTCCCAAC TGATGTGGCC TTGCTGGATG ATCCAGAATT TAAGAGTTAC GTTGAGCTTT ACGCTAAGGA TGAAGAAGCT TTCTTCAAAG ACTATGCGGA GTCGCACAAA  AAACTTTCCG AATTAGGGTT TAACCCGACC CAAACCGGTG CTAAGGCAAT TGTGCAAAAC GGCACCATAT TGGCTCAAAG TGCCGTTGGA GTTGCAGTTG CTGCTGCAGT TGTGATCTTC 
AGTTACTTTT ACGAAGTGAG GAAAAAGATG AAATAA 

Retrieve as FASTA