Entry information : ZmPrx85
Entry ID 170
Creation 2006-06-05 (Christophe Dunand)
Last sequence changes 2006-06-05
Sequence status complete
Reviewer reviewer name not stored
Last annotation changes 2010-12-23 (Marie Brette (Scipio))
Peroxidase information: ZmPrx85
Name ZmPrx85
Class Class III peroxidase    [Orthogroup: Prx151]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Zea
Organism Zea mays    [TaxId: 4577 ]
Cellular localisation N/D
Tissue types Mixed tissues
Silks
Inducer Fusarium infection
Repressor N/D
Best BLASTp hits
Perox score E-value ZmPrx85
start..stop
S start..stop
SbPrx99 585 0 22..331 25..337
SiPrx89 518 0 27..332 27..333
SpPrx25 436 3e-155 22..330 24..300
OsPrx59 349 2e-120 3..337 7..339
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 24834715..24835728 1014  
complement(join(24834715..24835728))


exon

Literature and cross-references ZmPrx85
Literature Duvick,J.P., Maddox,J.R., Navarro Acevedo,P.A. and Simmons,C.R.
Maize peroxidase genes and their use for improving plant disease resistance and stalk strength
DNA ref. GenBank:   AC194215.3 (55425..56435)
mRNA ref. GenBank:   AX546786
Cluster/Prediction ref. UniGene:   Zm.74471
Protein sequence: ZmPrx85
Sequence Properties
first value : protein
second value (mature protein)
Length (aa): %sProtein length in amino acid 337 (314)
PWM (Da): %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
35382.86 (33193.7) Transmb domain: %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i5-27o
PI (pH): %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
5.32 (5.09) Peptide Signal: %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 24 range:24-337
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSGRVFVLAA AFGVLLAAAA VSSRPVLTPL GTSRPAAGDL SVYFHADSCP QLETIVRSSV DAALQQNVRL TAGLLRLLFH DCFPQGCDAS ILLDNGERGL PPNVGLQQEA VQLVEDIRGK  VHAACGPTVS CADITVLATR DAVSLSGGPS FTVPLGRLDS AAPASSNDVF TLPPPTATVD ELLTAFGSKN LSDPADLVAL SGAHTVGKAR CSSFGDVAGP ATDDVTRCVT ATCSAPGSGD 
TLRDLDFLTP AVFDNLYFVE LTLRKNKGVM LPSDQGLVSD PRTSWLVQGF ADNHWWFFDQ FRTSMIKMSQ LRGPQGNVGE IRRNCFRPNT NGIAASA 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, no intron) and 69 ESTs. Contig contains 5 peroxidases ZmPrx 24, 47, 58, 81 and 85. Cultivar="CO388".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCGGCC GTGTGTTCGT CCTGGCCGCT GCCTTCGGCG TGCTGCTCGC CGCAGCCGCC GTGTCCTCGA GGCCCGTCCT GACTCCGCTG GGTACTAGCC GCCCTGCTGC CGGCGACCTG  TCCGTGTACT TCCACGCGGA CTCGTGCCCG CAGCTGGAGA CGATCGTGCG GTCCAGCGTG GACGCGGCGC TCCAGCAGAA CGTCCGTCTG ACGGCGGGTC TCCTCCGCCT CTTGTTCCAC  GACTGCTTCC CGCAGGGCTG CGACGCGTCC ATCCTCCTGG ACAACGGCGA GCGCGGCCTC CCGCCCAACG TGGGGCTGCA GCAGGAGGCC GTGCAGCTGG TGGAGGACAT CCGCGGGAAG  GTGCACGCGG CGTGCGGGCC CACCGTGTCG TGCGCCGACA TCACGGTGCT GGCCACCCGC GACGCCGTGA GCCTGTCCGG CGGGCCTTCC TTCACGGTGC CGCTGGGGCG GCTGGACAGC  GCGGCGCCGG CGTCCAGCAA CGACGTGTTC ACGCTGCCGC CGCCGACGGC GACGGTGGAC GAGCTGCTGA CGGCGTTCGG GAGCAAGAAC CTGTCGGACC CGGCGGACCT GGTGGCGCTG  TCGGGCGCGC ACACGGTGGG GAAGGCGCGG TGCAGCTCGT TTGGCGACGT GGCGGGCCCG GCCACCGACG ACGTGACGCG GTGCGTGACG GCGACGTGCT CGGCCCCCGG GAGCGGCGAC  ACGCTGCGGG ACCTGGACTT CCTGACGCCC GCCGTGTTCG ACAACCTCTA CTTCGTGGAG CTGACGCTGA GGAAGAACAA GGGGGTGATG CTGCCGTCGG ACCAGGGGCT GGTGAGCGAC  CCGCGCACGA GCTGGCTCGT CCAGGGCTTC GCCGACAACC ACTGGTGGTT CTTCGACCAG TTCAGGACCT CCATGATCAA GATGAGCCAG CTCAGGGGAC CCCAGGGGAA CGTCGGCGAG 
ATCCGCCGTA ACTGCTTCCG CCCAAACACC AACGGCATCG CCGCCTCTGC TTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCGGCC GTGTGTTCGT CCTGGCCGCT GCCTTCGGCG TGCTGCTCGC CGCAGCCGCC GTGTCCTCGA GGCCCGTCCT GACTCCGCTG GGTACTAGCC GCCCTGCTGC CGGCGACCTG  TCCGTGTACT TCCACGCGGA CTCGTGCCCG CAGCTGGAGA CGATCGTGCG GTCCAGCGTG GACGCGGCGC TCCAGCAGAA CGTCCGTCTG ACGGCGGGTC TCCTCCGCCT CTTGTTCCAC  GACTGCTTCC CGCAGGGCTG CGACGCGTCC ATCCTCCTGG ACAACGGCGA GCGCGGCCTC CCGCCCAACG TGGGGCTGCA GCAGGAGGCC GTGCAGCTGG TGGAGGACAT CCGCGGGAAG  GTGCACGCGG CGTGCGGGCC CACCGTGTCG TGCGCCGACA TCACGGTGCT GGCCACCCGC GACGCCGTGA GCCTGTCCGG CGGGCCTTCC TTCACGGTGC CGCTGGGGCG GCTGGACAGC  GCGGCGCCGG CGTCCAGCAA CGACGTGTTC ACGCTGCCGC CGCCGACGGC GACGGTGGAC GAGCTGCTGA CGGCGTTCGG GAGCAAGAAC CTGTCGGACC CGGCGGACCT GGTGGCGCTG  TCGGGCGCGC ACACGGTGGG GAAGGCGCGG TGCAGCTCGT TTGGCGACGT GGCGGGCCCG GCCACCGACG ACGTGACGCG GTGCGTGACG GCGACGTGCT CGGCCCCCGG GAGCGGCGAC  ACGCTGCGGG ACCTGGACTT CCTGACGCCC GCCGTGTTCG ACAACCTCTA CTTCGTGGAG CTGACGCTGA GGAAGAACAA GGGGGTGATG CTGCCGTCGG ACCAGGGGCT GGTGAGCGAC  CCGCGCACGA GCTGGCTCGT CCAGGGCTTC GCCGACAACC ACTGGTGGTT CTTCGACCAG TTCAGGACCT CCATGATCAA GATGAGCCAG CTCAGGGGAC CCCAGGGGAA CGTCGGCGAG 
ATCCGCCGTA ACTGCTTCCG CCCAAACACC AACGGCATCG CCGCCTCTGC TTGA 

Retrieve as FASTA