Entry information : SbPrxII02 (Sobic.004G076000.1[2.1] / Sb04g006270[1.4] / SbPrxIIE02)
Entry ID 1773
Creation 2007-10-01 (Christophe Dunand)
Last sequence changes 2010-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-08-05 (Christophe Dunand)
Peroxidase information: SbPrxII02 (Sobic.004G076000.1[2.1] / Sb04g006270[1.4] / SbPrxIIE02)
Name (synonym) SbPrxII02 (Sobic.004G076000.1[2.1] / Sb04g006270[1.4] / SbPrxIIE02)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Rhizomes
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrxII02
start..stop
S start..stop
SpPrxII0502 363 1e-129 21..231 19..229
ZmPrxII0503 338 2e-119 4..229 3..230
ScPrxII05 335 1e-118 18..230 2..211
OsPrxII0502 310 1e-108 10..230 7..225
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6234474..6235169 696  
complement(join(6234474..6235169))


exon

Literature and cross-references SbPrxII02 (Sobic.004G076000.1[2.1] / Sb04g006270[1.4] / SbPrxIIE02)
Literature Cordonnier-Pratt,M.-M., Wentzel,V., Suzuki,Y., Sugano,S., Klein ,R.R., Liang,C., Sun,F., Sullivan,R., Shah,M., Buchanan,C.D., Eastman,A. and Pratt,L.H. An EST database from Sorghum: heat-shocked seedlings.
DNA ref. Phytozome 11:   chromosome_4 (6235169..6234474)
Cluster/Prediction ref. UniGene:   Sbi.2436
Protein sequence: SbPrxII02 (Sobic.004G076000.1[2.1] / Sb04g006270[1.4] / SbPrxIIE02)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   231
PWM (Da):   %s   23968.64  
PI (pH):   %s   9.19
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATTTTTATA SLTTLSPAGV GKRFVLSSPP LSFSSHRLTA GLRHRHRGGA ASRTARRRAA SASPVVATIA VGDKLPDATL SYFDPSDGEL KTVTVAELTA GKKAILFAVP GAFTPTCSQK 
HLPGFVEKAG ELKAKGVETV ACVSVNDAFV MKAWKEALGL GEDVTLLSDG NLELTRALGV EMDLSDKPVG LGVRSRRYAL LAEDGVVKVL NLEDGGAFTT SSAEEMLKVL G 

Retrieve as FASTA  
Remarks complete sequence from genomic (chromo 4, no intron) and 10 ESTs.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCACCA CCACCACCAC GGCGACAGCG TCCCTCACCA CCCTGTCCCC CGCCGGCGTC GGCAAGCGGT TCGTCCTCTC GTCCCCGCCC CTCTCATTCT CCTCTCACCG CCTGACCGCC  GGCCTCCGCC ACCGCCACCG CGGCGGCGCG GCGTCGAGGA CGGCGAGGAG GCGGGCGGCG TCGGCGTCCC CGGTGGTGGC GACCATCGCG GTGGGCGACA AGCTCCCCGA CGCGACGCTG  TCCTACTTCG ACCCGTCCGA CGGGGAGCTG AAGACGGTGA CGGTGGCGGA GCTGACGGCG GGCAAGAAGG CCATCCTCTT CGCGGTGCCC GGCGCGTTCA CGCCCACGTG CTCGCAGAAG  CACCTGCCGG GGTTCGTGGA GAAGGCCGGC GAGCTCAAGG CCAAGGGCGT GGAGACCGTG GCGTGCGTGT CGGTGAACGA CGCGTTCGTG ATGAAGGCGT GGAAGGAGGC GCTGGGGCTC  GGCGAGGATG TGACGTTGCT GTCGGACGGC AACCTGGAGC TGACACGCGC GCTGGGCGTC GAGATGGACC TCTCCGATAA GCCCGTCGGG CTCGGCGTCC GGTCCAGGAG GTACGCGCTC 
CTGGCCGAGG ACGGCGTCGT CAAGGTGCTC AACCTCGAGG ACGGCGGCGC CTTCACCACC AGCAGCGCCG AGGAGATGCT CAAGGTGCTC GGCTGA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCACCA CCACCACCAC GGCGACAGCG TCCCTCACCA CCCTGTCCCC CGCCGGCGTC GGCAAGCGGT TCGTCCTCTC GTCCCCGCCC CTCTCATTCT CCTCTCACCG CCTGACCGCC  GGCCTCCGCC ACCGCCACCG CGGCGGCGCG GCGTCGAGGA CGGCGAGGAG GCGGGCGGCG TCGGCGTCCC CGGTGGTGGC GACCATCGCG GTGGGCGACA AGCTCCCCGA CGCGACGCTG  TCCTACTTCG ACCCGTCCGA CGGGGAGCTG AAGACGGTGA CGGTGGCGGA GCTGACGGCG GGCAAGAAGG CCATCCTCTT CGCGGTGCCC GGCGCGTTCA CGCCCACGTG CTCGCAGAAG  CACCTGCCGG GGTTCGTGGA GAAGGCCGGC GAGCTCAAGG CCAAGGGCGT GGAGACCGTG GCGTGCGTGT CGGTGAACGA CGCGTTCGTG ATGAAGGCGT GGAAGGAGGC GCTGGGGCTC  GGCGAGGATG TGACGTTGCT GTCGGACGGC AACCTGGAGC TGACACGCGC GCTGGGCGTC GAGATGGACC TCTCCGATAA GCCCGTCGGG CTCGGCGTCC GGTCCAGGAG GTACGCGCTC 
CTGGCCGAGG ACGGCGTCGT CAAGGTGCTC AACCTCGAGG ACGGCGGCGC CTTCACCACC AGCAGCGCCG AGGAGATGCT CAAGGTGCTC GGCTGA 

Retrieve as FASTA  
cDNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CGCCGGACGC GCCGCAGCCC GCAGCCGCGA AACCACATCC CCGCACACGG CACGCCTCGG CCTCGCAACC CAACCCAAGC GGATAGCATT GCGTCGAACA GTTGCAATGG CCACCACCAC  CACCACGGCG ACAGCGTCCC TCACCACCCT GTCCCCCGCC GGCGTCGGCA AGCGGTTCGT CCTCTCGTCC CCGCCCCTCT CATTCTCCTC TCACCGCCTG ACCGCCGGCC TCCGCCACCG  CCACCGCGGC GGCGCGGCGT CGAGGACGGC GAGGAGGCGG GCGGCGTCGG CGTCCCCGGT GGTGGCGACC ATCGCGGTGG GCGACAAGCT CCCCGACGCG ACGCTGTCCT ACTTCGACCC  GTCCGACGGG GAGCTGAAGA CGGTGACGGT GGCGGAGCTG ACGGCGGGCA AGAAGGCCAT CCTCTTCGCG GTGCCCGGCG CGTTCACGCC CACGTGCTCG CAGAAGCACC TGCCGGGGTT  CGTGGAGAAG GCCGGCGAGC TCAAGGCCAA GGGCGTGGAG ACCGTGGCGT GCGTGTCGGT GAACGACGCG TTCGTGATGA AGGCGTGGAA GGAGGCGCTG GGGCTCGGCG AGGATGTGAC  GTTGCTGTCG GACGGCAACC TGGAGCTGAC ACGCGCGCTG GGCGTCGAGA TGGACCTCTC CGATAAGCCC GTCGGGCTCG GCGTCCGGTC CAGGAGGTAC GCGCTCCTGG CCGAGGACGG  CGTCGTCAAG GTGCTCAACC TCGAGGACGG CGGCGCCTTC ACCACCAGCA GCGCCGAGGA GATGCTCAAG GTGCTCGGCT GAGATTTCAG CAATTGAGCT GCTTGACTGC CGTGCCGCGT  CGATCGTCTG CTCGTTGTGG TCGTGCCGCC GGTGCAGTTG CAGCAGTAGT GAATAATAAT AGTTGCGGGA GCCGTGCTGC ATTCTGCACT TCTCCTGCGA CAGAAACCTA TCGTCGTTGA  TGTGAAGAGG AGTTGTTTTG TTGGACGTTT TTTTGCCATG CCCGTGTAGC TATGTGTTCG ATGATGAAAC AAAAAAAAAA GTGAAATGTC AGTTGAGACT TGAGAGTTGC GTGCCCGTGT 
TTCCGTGGAA TGCAAATGCA TAGTAACTG 

Retrieve as FASTA