Entry information : ScPrx06
Entry ID 1833
Creation 2007-02-14 (Christophe Dunand)
Last sequence changes 2007-02-14
Sequence status partial
Reviewer reviewer name not stored
Last annotation changes 2009-01-12 (Cyril Jourda)
Peroxidase information: ScPrx06
Name ScPrx06
Class Class III peroxidase     [Orthogroup: Prx018]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Secale
Organism Secale cereal (Rye)    [TaxId: 4550 ]
Cellular localisation N/D
Tissue types Root tips
Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ScPrx06
start..stop
S start..stop
HvPrx92 333 3e-119 1..179 1..179
TaPrx32 335 5e-118 1..179 1..179
BdiPrx23 298 3e-103 1..179 1..176
OsPrx86 286 2e-98 26..179 28..181
Literature and cross-references ScPrx06
Literature Anderson,O.D., Butler,E., Chao,S., Gustafson,J.P., Han,P.S., Hsia ,C.C., Kang,Y., Lazo,G.R., Miller,R., Rausch,C.J., Seaton,C.L. and Tong,J.C.
The structure and function of the expressed portion of the wheat genomes - Aluminum-stressed root tip cDNA library from rye (Secale cereale)
Unpublished (2000)
EST ref. GenBank:   BE586211 [5' end]
Protein sequence: ScPrx06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa): %sProtein length in amino acid 179 (152)
PWM (Da): %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
18372.26 (15782.9) Transmb domain: %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
o10-27i
PI (pH): %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
8.39 (8.22) Peptide Signal: %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 28 range:28-179
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAVFTTRSPA FVGIAVVLCV LAGGASAQQL SPNFYSRSCP NLASIVRSGM TSALQTERRM GASILRLFFH DCFVNGCDGS ILLDDTSTFT GEKNAGPNAN SARGFDVIDA IKTRVEAACR 
ATVSCADILA LAARDGVNLL GGPTWSVPLG RRDSRTASQS AGNANLPGPG SSLATLITM 

Retrieve as FASTA  
Remarks 3'is missing. Sequence from 2 EST. Seedlings root tips, cultivar="Blanco"