Entry information : HaPrx18 ( HanXRQChr08g0222541)
Entry ID 1880
Creation 2005-09-27 (Christophe Dunand)
Last sequence changes 2016-04-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-11-23 (Catherine Mathe (Scipio))
Peroxidase information: HaPrx18 ( HanXRQChr08g0222541)
Name (synonym) HaPrx18 ( HanXRQChr08g0222541)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus
Organism Helianthus annuus (Sunflower)    [TaxId: 4232 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value HaPrx18
start..stop
S start..stop
LperPrx33 585 0 8..325 4..321
NtPrx11-1A 518 0 13..325 9..321
CiPrx04 508 0 59..325 1..267
CanPrx18 507 0 12..325 11..324
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 55578528..55578752 225 N° 2 55579312..55579503 192 N° 3 55579613..55579778 166 N° 4 55580200..55580594 395
join(55578528..55578752,55579312..55579503,55579613..55579778,55580200..55580594 )


exon

Literature and cross-references HaPrx18 ( HanXRQChr08g0222541)
Literature Kozik,A., Michelmore,R.W., Knapp,S., Matvienko,M., Rieseberg,L.,Lin,H., van Damme,M., Lavelle,D., Chevalier,P., Ziegle,J., Ellison,P., Kolkman,J., Slabaugh,M.S., Livingston,K., Zhou,Y., Lai,Z., Church,S., Jackson,L. and Bradford,K. Lettuce and Sunflower ESTs from the Compositae Genome Project
DNA ref. HanXRQ genome:   HanXRQChr08 (55578528..55580594)
EST ref. GenBank:   GE507029.1 [5' end]   AJ541430.1 [3' end]
Cluster/Prediction ref. HanXRQ:   HanXRQChr08g0222541
Protein sequence: HaPrx18 ( HanXRQChr08g0222541)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (297)
PWM (Da):   %s   34540.14 (31597.7) Transmb domain:   %s   i12-34o
PI (pH):   %s   9.51 (9.35) Peptide Signal:   %s   cut: 29 range:29-325
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVFSSSSSSSSVLLKYALVMFFMGVVSAQLSTNFYSSSCPKLLPTVRSAVQSAISKETRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKRAAPNFRSARGFEVVDNIKSAVESVCPGVVSCADILAISARDSVHILGGPTWGVKLGRRDSRTASQAAANNSIPPPTSSLSALISSFRAVGLSAKDMVALSGSHTIGQARCTNFRARIYNETNNLDASFATQRRSNCPRATGSGDNNLAPLDVQSPNAFNNDYYKNLINQKGLLHSDQQLFNGGSADSTVRQYSSNPGQFSADFAAAMIKMGDNKPLTGSSGEIRKNCRRPN

Retrieve as FASTA  
Remarks Complete sequence from genomic and 1 EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTGTTCTCTTCTTCTTCTTCTTCTTCTTCAGTTCTACTGAAGTATGCACTTGTTATGTTTTTTATGGGAGTTGTTTCGGCTCAACTTTCAACTAACTTTTACTCGAGCTCTTGCCCA
AAACTTCTCCCGACTGTAAGATCAGCCGTGCAATCGGCTATTTCAAAAGAAACTCGGATGGGAGCTTCTCTCCTTCGGTTGCACTTCCATGATTGCTTTGTCAAT
GTATATTTCTTTATT
TGTTTTCTCATCCTTTTAGACTTTCTTTCAAATTTCTGAGCACACATGCGCGTACACACACAAAGCGCGGCGTGTTTGTCTATATTTACATATATAGGCATGGTCAATACACATCATATG
TGTCTATATATACATATTTAGGCATGGTAATTACACATTAGTTGTGGTGAGACAAAAAAAAAATGAGAGATATAGTCATATAACACCATAATGGAATGAATGAATTTTTTGGGAAGCAAA
TAGCCATTTCCATTTTTTACTTTAGAATATTTATGTTAACGTCAACACACATATTAAATAAAATCACCAAGAGTATCAATAGGCAAGAATGAACCAACATTTAGTACTAGTTTTCTAGAA
AATCATCATTAAGATATTCAAATATGCTACATGGTGACAACTAGTAAAGTCAAACTTAACTAATATGATTAATTATATCGTAATCATGTAGTAACGAGGCTTTTAAGAAAAAATGTTTCA
AGTTTACATATATTTTATTTTAACTTTTGTTAACTATACTTACCAACATATCATTTTCGATCAGGGATGTGACGGTTCGATCCTTCTTGATGATACATCCTCCTTCACCGGTGAAAAGCG
TGCAGCTCCTAACTTTAGATCCGCTAGAGGGTTTGAAGTGGTGGACAATATAAAGTCGGCTGTCGAAAGTGTATGCCCTGGTGTGGTCTCGTGTGCTGATATACTCGCTATTAGCGCTAG
AGACTCCGTTCATATT
GTAAGTTTCTTTTCTTATCATGTTAGTGTTTGGATTGAAAGTTAATCTAGCTACTAACCATCAAAATTAAGGTTTCAAAAGAAATGCTAACCTAGTGTTTATAA
TGAAGCTTGGTGGACCTACTTGGGGTGTTAAATTGGGAAGGCGCGACTCAAGGACCGCAAGCCAGGCTGCAGCCAACAACAGCATTCCTCCACCCACATCGAGCCTCAGTGCACTCATCT
CTTCTTTTAGGGCCGTTGGTCTTTCGGCTAAGGACATGGTGGCTCTATCAG
GTCAACATCCCCCCCCCCCCCTCTTGACTTTAAAACTAGTTAATTTTTTAAAATGTTTTATGTCAAAAA
GTAAATTAGAATATTTTTTGTCAAATAAAAAAGAAACAAATGTCAACAACCATCAACTTAAATCATTTTATCCACTCTTCTCGCAACCGGACTTGTTTGGTTGAGCCTTCTTAAATCATC
TTCATTTGAACCGGTCACTTACAGGTTGAACCAGAGGAATTGGCGAACCAAACAATGGTTGGGCTTGATTTAAATAAACATTTTCATATTTTATTTTTTTAAAATCAGTTATATAACCGG
TCTGTCCGGTGGATCGATAAGATGACCAGTTCAGTGACCGCTTTGACCGAGTATAAAAAGATTAAATTTTAAATATTGACCGATTGATATACTATCTTGGAAACGAAAACAGGTTCCCAC
ACAATCGGGCAGGCACGGTGCACCAACTTCCGAGCCCGAATCTACAACGAAACCAACAATTTGGATGCTTCTTTCGCTACACAAAGGCGGTCCAACTGCCCGAGAGCCACGGGCTCTGGT
GACAACAATTTGGCACCACTTGATGTCCAGTCTCCAAACGCTTTCAACAATGACTATTACAAGAACTTGATCAACCAAAAGGGGTTGCTCCACTCTGATCAACAACTGTTCAATGGCGGT
TCGGCTGATTCAACCGTCAGACAATATAGCAGCAACCCCGGTCAATTCAGTGCCGATTTTGCCGCAGCCATGATCAAGATGGGTGATAACAAGCCACTAACTGGATCCAGTGGAGAGATC
AGGAAGAATTGCAGGAGGCCCAATTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTGTTCTCTTCTTCTTCTTCTTCTTCTTCAGTTCTACTGAAGTATGCACTTGTTATGTTTTTTATGGGAGTTGTTTCGGCTCAACTTTCAACTAACTTTTACTCGAGCTCTTGCCCA
AAACTTCTCCCGACTGTAAGATCAGCCGTGCAATCGGCTATTTCAAAAGAAACTCGGATGGGAGCTTCTCTCCTTCGGTTGCACTTCCATGATTGCTTTGTCAAT
GGATGTGACGGTTCG
ATCCTTCTTGATGATACATCCTCCTTCACCGGTGAAAAGCGTGCAGCTCCTAACTTTAGATCCGCTAGAGGGTTTGAAGTGGTGGACAATATAAAGTCGGCTGTCGAAAGTGTATGCCCT
GGTGTGGTCTCGTGTGCTGATATACTCGCTATTAGCGCTAGAGACTCCGTTCATATT
CTTGGTGGACCTACTTGGGGTGTTAAATTGGGAAGGCGCGACTCAAGGACCGCAAGCCAGGCT
GCAGCCAACAACAGCATTCCTCCACCCACATCGAGCCTCAGTGCACTCATCTCTTCTTTTAGGGCCGTTGGTCTTTCGGCTAAGGACATGGTGGCTCTATCAG
GTTCCCACACAATCGGG
CAGGCACGGTGCACCAACTTCCGAGCCCGAATCTACAACGAAACCAACAATTTGGATGCTTCTTTCGCTACACAAAGGCGGTCCAACTGCCCGAGAGCCACGGGCTCTGGTGACAACAAT
TTGGCACCACTTGATGTCCAGTCTCCAAACGCTTTCAACAATGACTATTACAAGAACTTGATCAACCAAAAGGGGTTGCTCCACTCTGATCAACAACTGTTCAATGGCGGTTCGGCTGAT
TCAACCGTCAGACAATATAGCAGCAACCCCGGTCAATTCAGTGCCGATTTTGCCGCAGCCATGATCAAGATGGGTGATAACAAGCCACTAACTGGATCCAGTGGAGAGATCAGGAAGAAT
TGCAGGAGGCCCAATTAA

Retrieve as FASTA