Entry information : GmAPx05 (Glyma01g36940)
Entry ID 2230
Creation 2007-02-14 (Felipe Teixeira)
Last sequence changes 2011-05-10 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-12-13 (Qiang Li)
Peroxidase information: GmAPx05 (Glyma01g36940)
Name (synonym) GmAPx05 (Glyma01g36940)
Class Ascorbate peroxidase     [Orthogroup: APx003]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation Peroxisomal
Tissue type Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx05
start..stop
S start..stop
GmAPx06 336 8e-117 1..296 1..280
MtAPx05 333 9e-116 1..295 1..278
MeAPx09 311 7e-107 1..244 1..244
VuAPx02 306 9e-105 1..243 1..245
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 49334791..49334903 113 N° 2 49335821..49335945 125 N° 3 49336022..49336071 50 N° 4 49336197..49336262 66
N° 5 49336376..49336424 49 N° 6 49336688..49336773 86 N° 7 49336870..49336949 80 N° 8 49337057..49337153 97
N° 9 49338310..49338546 237  
join(49334791..49334903,49335821..49335945,49336022..49336071,49336197..49336262 ,49336376..49336424,49336688..49336773,49336870..49336949,49337057..49337153,493 38310..49338546)


exon

Literature and cross-references GmAPx05 (Glyma01g36940)
Literature Shoemaker,R., Keim,P., Vodkin,L., Erpelding,J., Coryell,V., Khanna ,A., Bolla,B., Marra,M., Hillier,L., Kucaba,T., Martin,J., Beck,C., Wylie,T., Underwood,K., Steptoe,M., Theising,B., Allen,M., Bowers ,Y., Person,B., Swaller,T., Gibbons,M., Pape,D., Harvey,N., Schurk ,R., Ritter,E., Kohn,S., Shin,T., Jackson,Y., Cardenas,M., McCann ,R., Waterston,R. and Wilson,R. Public Soybean EST Project.
DNA ref. Phytozome 11:   Gm01 (49334791..49338546)
EST ref. GenBank:   AW309914
Cluster/Prediction ref. UniGene:   Gma.4678
Protein sequence: GmAPx05 (Glyma01g36940)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   300
PWM (Da):   %s   33662.54 Transmb domain:   %s   o274-291i
PI (pH):   %s   9.15
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAEPVVDDEYLKEIDKARRELRAFITSNQCAPLMLRLAWNDAATYDARNRAGGPNGSIRTDKELKHEANEGLLKATQLEHVKAKLKKVSYADLYLAGVVAIEVSGGPTIEFLPGRKDSMESSAEGLLPDVKQGASIIRNIFSRMGISDDKHIVALCGGLTGETLKDRSDSKGQWPKDPLKFDNSYYKKILSKDLSSRLPIEDALLTDQSFRRHVEEYSDENSFFKEYAMSHKKLSELGYNLKKQNQSKVPDEEQNQPKGPYEKLNQHRGLIGIGIVSVVTVILGYLLKRKKNQLKK*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 8 introns) and 4 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGAACCTGTTGTTGACGACGAATATCTCAAGGAAATAGACAAGGCTCGACGTGAACTTCGCGCTTTCATCACCAGCAACCAATGCGCTCCTCTCATGCTTCGATTAGCGTACATC
ACTCACTACTGCTTTCATTTCTTAACTTCTGAAGTAACATGTCAATAAGTCCTTTTAAAAGATTCCTTTCCTTTTTTCATCCATGACAATTTGAAATAATTTACATATCTGATTTAACTA
TTTAAATTCCTTTAATGTAACATATAGATTTTAAAAAAAAAAACAACTTAAAGAATGTAATAACTTATTTTTAAAAGACTTTTATAATCAATGTTTTGTAATTTAAATTTTAATGGAGTT
ATATATTATAAGAATTTATAAGATTTGAAATGACTTACATTTACATGAGATTATAAAATTTGAAAGGGTTGATATTTTAACGAACATTTACAGTTAAAAGAAATGTCACACCTCTTTACA
CTTTCTTTCTTTTGTTATTTCCTAGTTACAAATTTCCCTTTTAAAGTACTAATACAGCACATGTAAAAATATATAGTAAAAAAATCTTTTACCTAATTACAATGAATGTATGCAGGATTG
AAAGAAAGAAATGATCAAACATTTATACTGCCTTCACGAAAAGATAAAGAATTATGTGACAGGAGACAAAAAAAATAATTCTGGTAACGCAAAATAAAAAGTGTCCAGAAATATGGGTGT
AACTGGTGGATAAATATAATACTACTATTTATGTCTCTTACTCAAAAAACTCACCCAAAATCGACCGAAATCCACCATATATACAATATAATCCATCAATATTATAAGATTTTTTTTGTA
ATTCACAAAAAGTCTGAATTAGACATCATCAAATTTGGACATCATATCTACAAAATTCAGATAATCATAACTGAATATGACAGTACATTTAAACATCTTAATTATATTTTAAAATCTCAA
TGCAATGTGCATCTCCAAATAAATTCTCTATAGTCTCATAAAATTAATTAATTACATACTCTTTACACAGGTGGAACGATGCTGCCACCTACGATGCCAGAAACAGAGCAGGAGGCCCCA
ACGGTTCTATCAGGACTGATAAAGAGTTGAAACACGAAGCAAACGAGGGATTGTTAAAAGCAACTCAATTATGTG
GTCAATTTCCTTTCACTCAACTCAAGCATGCTTATTTATTATTCT
ACCTCTTAATTCGTTTTTATTTCCCAAACAGAGCATGTGAAGGCCAAACTTAAAAAAGTTTCATACGCAGACCTTTACCAGGTTATTTTAATTAACATAGATATTGTGATAATTAAACAA
CTTAATTAGACTAGAAAACAGGGGATCCAAAATCAATTTAGTTTGATGATTATATTAACTCTTATACGGTTGGATTTGCATTTCAGCTAGCTGGTGTTGTTGCAATAGAGGTCTCTGGGG
GTCCAACTATTGAATTTTTGCCTGGGAGAAAA
GTAATTAAGTATATCATGCGCAAGTTTTGTTTACCCCTCATAATGCACATGTTTCGATTTTCGATACTTTTAACTTCATATTTACTAT
GCTACATTACTACTTTCTTTACTAGGATTCAATGGAATCTTCAGCAGAAGGGCTTCTTCCAGATGTCAAACAAGGTATACTATATACTACTTTAATTTCTTTACTAGGATACACGTGTTA
TATATCTTATGAATAATAAAGATTTAATTTGCCCTGCATTGTTTGGTTGTGTTCCTCTTTTTATTTGCAATTTGGATCTAGTTGTTAAAACATTCAACACACATGGTCTTCTATTTAATC
ATTACGTATTCTGTCTGATGATATTCTAAGTTTTTGGAATCTTGACTTACAAGTTACAATTGTTATGAAAAAAAAAATTGATATGAAAAATTTTCAGGTGCATCGATTATAAGGAATATA
TTTTCTCGTATGGGTATAAGTGATGATAAACACATCGTTGCCCTATGTGGAGGCCTCACTTGG
GTAAGAACGATATATCCAAAAGTTCCTATGCATGAGTCCGTATTTATAGTTTTAACC
ATACATTCAATCTCATTATTATTCACGTCAATTGATAAGGGGGAAACACTTAAAGATCGTTCTGACTCTAAAGGTCAATGGCCAAAGGACCCTTTGAAGTTTGATAACTCCTATTATAAG
TAAGATGTCTAATTACATGATGACAATTGTTTTCTTTTTAAGATGTATACAAATTTCTGTCAAAAAAAGATGTATAAAAATTGAAATTTCTTATAACACTGAACAGGAAAATATTGAGTA
AGGATTTATCATCTAGGCTTCCCATAGAAGATGCTTTACTAACCGATCAAAGCTTCCGCCGCCATGTTGAAGAGTATTCAAAG
GTAAACGTGTAATGACCAAAGAGTAGGGTTTTATTTT
ACTTTTTATTATTATTTAGACTTAAATATAATTTTGGTCTTTTTAATTCATTAGATCAATACTTTTGATTTTTCTATTTTAAGATAAAGACATTCAATTTATTTATTTTAAAAAAGTTAT
AATTGTTGTCCTTTATGTCAAAATAAAGACATTAGTTCTCCTATTTTACAAAATTTTTAATTTTAATCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGATCTAACATATTCATTTAAAGTATCATAAAAAATGATTTAATTAATTGTTATGTAAGAAATAAAATAAATAAAACATAAATAAAATTGAAGATTGAACCAAAATTATTAATTTTTTAA
AAAATATGGGATCAAAATTTTGAATTTTAAAAAATAGAAGGATTAAATATCTCTATTTTAAAACATAAAGAATAAAATCAATTTTTTTCAAAACAGATAAACCAAATATCTCTATTTTAA
AATAGAAAACCAAAATTATACATTAAACAAAATATGACACTCAAATTACATTTATTTCAAATGAGTTGGAAACGACATATTACCGTCAACTATTTATAGTAATATAAAATTAGGTTCAAA
TTTAACATACTATATTTTTTTATAATAATATTTTTAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTATAATAATATTTTTTCCAAGATTTTATTATACAAGGATAATTTCTCATAACTTTTAGAATAAAAAATTAATACAGTTAAAATTGATACATTTGATACAATTAGTAAATT
ACATTTATTAGATAAAATCAAACAGTTCACTCGAGTGAGCATTGAGTGAACTTTGAGGTATGTATTGATCTCGTGAACTCCCAAAACTCAATTTACTTCAATTTTTCTCAATAAAAAAAC
AATTCAAATTTCGATCTCACCAAATCAGATTTAAAATATGAATTCAAATTCTTAACCATTTGAATTTTATTCAATGACTCTGATTTCTTAACCACATCAACCGTGCTCATTTTTTTTAGT
ATATTATTGAGTCACAATCCTAATTTTCTGTTGTAATAGGATGAGAATAGTTTCTTCAAAGAATATGCAATGTCACATAAGAAACTCTCAGAACTAGGCTACAATCTCAAGAAGCAAAAT
CAATCAAAGGTACCAGATGAGGAGCAAAATCAGCCCAAGGGACCATATGAGAAGCTAAATCAGCACAGGGGACTTATAGGAATCGGTATAGTATCCGTGGTGACCGTGATATTAGGTTAC
TTACTCAAGAGGAAGAAAAACCAGTTGAAGAAATGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGAACCTGTTGTTGACGACGAATATCTCAAGGAAATAGACAAGGCTCGACGTGAACTTCGCGCTTTCATCACCAGCAACCAATGCGCTCCTCTCATGCTTCGATTAGCGTGGAAC
GATGCTGCCACCTACGATGCCAGAAACAGAGCAGGAGGCCCCAACGGTTCTATCAGGACTGATAAAGAGTTGAAACACGAAGCAAACGAGGGATTGTTAAAAGCAACTCAATTATGTG
AG
CATGTGAAGGCCAAACTTAAAAAAGTTTCATACGCAGACCTTTACCAG
CTAGCTGGTGTTGTTGCAATAGAGGTCTCTGGGGGTCCAACTATTGAATTTTTGCCTGGGAGAAAAGATTCA
ATGGAATCTTCAGCAGAAGGGCTTCTTCCAGATGTCAAACAAG
GTGCATCGATTATAAGGAATATATTTTCTCGTATGGGTATAAGTGATGATAAACACATCGTTGCCCTATGTGGAGGC
CTCACTTGG
GGGGAAACACTTAAAGATCGTTCTGACTCTAAAGGTCAATGGCCAAAGGACCCTTTGAAGTTTGATAACTCCTATTATAAGAAAATATTGAGTAAGGATTTATCATCTAGG
CTTCCCATAGAAGATGCTTTACTAACCGATCAAAGCTTCCGCCGCCATGTTGAAGAGTATTCAAAG
GATGAGAATAGTTTCTTCAAAGAATATGCAATGTCACATAAGAAACTCTCAGAA
CTAGGCTACAATCTCAAGAAGCAAAATCAATCAAAGGTACCAGATGAGGAGCAAAATCAGCCCAAGGGACCATATGAGAAGCTAAATCAGCACAGGGGACTTATAGGAATCGGTATAGTA
TCCGTGGTGACCGTGATATTAGGTTACTTACTCAAGAGGAAGAAAAACCAGTTGAAGAAATGA

Retrieve as FASTA