Entry information : GmAPx06 (Glyma11g08320)
Entry ID 2231
Creation 2007-02-14 (Felipe Teixeira)
Last sequence changes 2011-05-10 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-12-13 (Qiang Li)
Peroxidase information: GmAPx06 (Glyma11g08320)
Name (synonym) GmAPx06 (Glyma11g08320)
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation Peroxisomal
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx06
start..stop
S start..stop
MtAPx05 477 8e-173 1..280 1..281
LsaAPx02 429 8e-154 1..279 1..284
LeAPx06 426 1e-152 1..278 1..286
MeAPx09 425 3e-152 1..278 1..280
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5902919..5903031 113 N° 2 5902703..5902827 125 N° 3 5902572..5902621 50 N° 4 5902317..5902382 66
N° 5 5902179..5902227 49 N° 6 5901439..5901521 83 N° 7 5901259..5901338 80 N° 8 5901062..5901164 103
N° 9 5900778..5900951 174  
complement(join(5900778..5900951,5901062..5901164,5901259..5901338,5901439..5901 521,5902179..5902227,5902317..5902382,5902572..5902621,5902703..5902827,5902919. .5903031))


exon

Literature and cross-references GmAPx06 (Glyma11g08320)
Literature Shoemaker,R., Keim,P., Vodkin,L., Erpelding,J., Coryell,V., Khanna ,A., Bolla,B., Marra,M., Hillier,L., Kucaba,T., Martin,J., Beck,C., Wylie,T., Underwood,K., Steptoe,M., Theising,B., Allen,M., Bowers ,Y., Person,B., Swaller,T., Gibbons,M., Pape,D., Harvey,N., Schurk ,R., Ritter,E., Kohn,S., Shin,T., Jackson,Y., Cardenas,M., McCann ,R., Waterston,R. and Wilson,R. Public Soybean EST Project
DNA ref. Phytozome 12:   Gm11 (5903031..5900778)
EST ref. GenBank:   AW707196.1 [Other strain]
Cluster/Prediction ref. UniGene:   Gma.24019
Protein sequence: GmAPx06 (Glyma11g08320)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   281
PWM (Da):   %s   31162.33 Transmb domain:   %s   o250-272i
PI (pH):   %s   9.51
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAKPRVDAEYLKEIEKARRDLRALISNRNCAPLMLRLAWHDAGTYDAKTNTGGPNGSIRNRQELNHAANKGLETALAFCEEVKAKHPKISYADLYQLAGVVAVEVTGGPTINFVPGRKDSLESPAEGRLPDAKQGASHLRDIFYRMGLGDKDIVALSGGHTLGKAHKDRSDFHGQWTKDPLKFDNSYFVELLRGESKDLLKLPTDKALVEDPNFRKYVELYAKDEDAFFSDYATSHKKLSELGFIFKNHRSILAKGVIGIAIVLTAVILGYLRELNKKTN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 11, 8 introns) and 3 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAAAGCCTAGAGTTGATGCTGAGTATCTGAAGGAAATCGAGAAGGCTCGTCGTGACCTTCGCGCTCTTATCTCCAACAGAAACTGCGCCCCTCTCATGCTTCGATTAGCGTACGTT
TCATTTCTTTCTCTATATATCCATATATTTAGAACATTAATTTCATATAGCAAACATCTAGTGACAATAATATATAATTTGTAGGTGGCATGATGCTGGTACTTACGATGCTAAAACAAA
CACAGGAGGCCCTAATGGTTCTATCAGAAACAGACAAGAGTTGAATCACGCAGCAAACAAGGGACTGGAAACAGCACTTGCCTTCTGTG
GTTAGTTTGATGAAATTAAATTCTCTTATAT
TCTATCAGTTTAATCCTCACTGATTTAGTTTTGGTTTCTTTGGATAATAGAGGAAGTGAAGGCCAAACATCCAAAAATTTCATATGCCGACCTTTACCAGGTTAATTATTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTATCTAATTTTTTTCCCTTCATTGATAT
TTGGAGTCATAGATTAACTTGTATATCTGTGATTGGATTTGTATTTCAGCTAGCTGGTGTTGTTGCAGTAGAAGTTACCGGGGGGCCAACTATTAACTTTGTTCCCGGGAGAAAAGTATG
TTTCATGCGCAAGTTTTGTTTGGTCTCTTCGATAACATTATCTTTAGATTTACTATATACTACTTTTCTTTATTATTATACTAGGATTCATTGGAATCTCCAGCAGAGGGGCGTCTTCCA
GATGCCAAACAAG
GTAAATCGATCACTGTGCTAATTGTTTCGTCTCCAGTTTTTTTCTGCCATTCCTTCCCTTGATAAAAACTATTTTGCGACCTTACTTTTAATTTATAATAATACTCC
CTTATGTAAAATGTCACACTAATTAGGAAAACAATCTTTGGACACTTAGATGCTAGAGAGAAAGGAGAAAACAAAATGAATTATTTTTAACAAATACAAAATGAAGTGTTATCCAATAAC
ATGGTTACTTAAAAAGTCAATTAACGTGAAAAGCTCTCCCATGGGTTGGCTCTGCTGTTGTTCAATAGTGTTACCATTTGACAAGAGTTGAATTTTGCAACCTGCTTATCGTATAAATAG
CCATTTCATTACGTTAAACGTTGTTCAATACTTACTAGCTTTGACTAAAACTTTTGGAGTAGCCAAAAGCCTATGAACAATTTTTTTTTTATATGTATATAATTAAGGGGAGCCAAAAGA
CAAAATGACTATACACTGACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTATGATTAGATGATAATCAAAAATT
ATTTTACAGCCTGAAAACACATGGATAAATCTCTTCAAAAAATTCATCGATGTATATGAAATAATTTCAGGTGCGTCGCATCTAAGAGATATCTTTTATCGCATGGGTCTAGGTGACAAA
GACATTGTGGCTCTATCCGGAGGTCACACTTTG
GTAAAAACAATATTACATCCTAAAGTTCTTTAATTAGTATATAGTTAAAGTATACACTTAATCTCATCCAATTCACTTCAATTGTTT
GTATTCGTTTAAGGGTAAGGCACATAAAGATCGTTCTGACTTTCATGGTCAATGGACAAAGGACCCTTTGAAGTTTGATAATTCCTATTTTGTGTAAGATGTTCAATTACACTACATACG
TCAATTGTTTGTTTATTTAAAATGTATAAAAATAAAAATAATTGAAATTTCTCGTAACACTAAACAGGGAATTGCTGAGAGGGGAGTCAAAAGATTTACTGAAGCTTCCCACAGACAAGG
CTCTAGTTGAAGATCCTAATTTCCGCAAGTATGTTGAACTATATGCGAAG
GTAACTACAGACAAAGAGTTGAAAACATTTTACTGTCACTATTTTTTTTATCAATATAATAATAAAAAGA
ATTTTGGTTCACACTAATAATTTTCAATTGTACTATGTAGGATGAAGATGCTTTTTTCTCAGATTATGCAACCTCACACAAAAAACTCTCAGAGCTGGGCTTTATTTTCAAGAATCATCG
TTCCATATTGGCCAAGGGAGTTATAGGAATTGCTATTGTCTTAACCGCCGTGATCTTGGGTTACTTACGTGAACTGAACAAAAAAACCAATTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAAAGCCTAGAGTTGATGCTGAGTATCTGAAGGAAATCGAGAAGGCTCGTCGTGACCTTCGCGCTCTTATCTCCAACAGAAACTGCGCCCCTCTCATGCTTCGATTAGCGTGGCAT
GATGCTGGTACTTACGATGCTAAAACAAACACAGGAGGCCCTAATGGTTCTATCAGAAACAGACAAGAGTTGAATCACGCAGCAAACAAGGGACTGGAAACAGCACTTGCCTTCTGTG
AG
GAAGTGAAGGCCAAACATCCAAAAATTTCATATGCCGACCTTTACCAG
CTAGCTGGTGTTGTTGCAGTAGAAGTTACCGGGGGGCCAACTATTAACTTTGTTCCCGGGAGAAAAGATTCA
TTGGAATCTCCAGCAGAGGGGCGTCTTCCAGATGCCAAACAAG
GTGCGTCGCATCTAAGAGATATCTTTTATCGCATGGGTCTAGGTGACAAAGACATTGTGGCTCTATCCGGAGGTCAC
ACTTTG
GGTAAGGCACATAAAGATCGTTCTGACTTTCATGGTCAATGGACAAAGGACCCTTTGAAGTTTGATAATTCCTATTTTGTGGAATTGCTGAGAGGGGAGTCAAAAGATTTACTG
AAGCTTCCCACAGACAAGGCTCTAGTTGAAGATCCTAATTTCCGCAAGTATGTTGAACTATATGCGAAG
GATGAAGATGCTTTTTTCTCAGATTATGCAACCTCACACAAAAAACTCTCA
GAGCTGGGCTTTATTTTCAAGAATCATCGTTCCATATTGGCCAAGGGAGTTATAGGAATTGCTATTGTCTTAACCGCCGTGATCTTGGGTTACTTACGTGAACTGAACAAAAAAACCAAT
TGA

Retrieve as FASTA