Entry information : TceCIIBA01 (tclip / LiP01)
Entry ID 2311
Creation 2006-09-01 (Christophe Dunand)
Last sequence changes 2012-02-10 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-02-02 (Christophe Dunand)
Peroxidase information: TceCIIBA01 (tclip / LiP01)
Name (synonym) TceCIIBA01 (tclip / LiP01)
Class Other class II peroxidase type A    [Orthogroup: CIIBA001]
Taxonomy Fungi/Metazoa; Fungi; Basidiomycota; Basidiomycota
Organism Trametes cervina    [TaxId: 1111950 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TceCIIBA01
start..stop
S start..stop
CuniCIIBA01 446 5e-158 1..359 1..358
ParcCIIBA04 432 3e-152 24..359 27..361
CuniCIIBA02 431 3e-152 1..356 1..352
CuniCIIBA04 431 8e-152 1..359 1..360
Literature and cross-references TceCIIBA01 (tclip / LiP01)
Literature Miki Y., Ichinose H., Wariishi H. Molecular characterization of lignin peroxidase from the white-rot basidiomycete Trametes cervina: a novel fungal peroxidase.FEMS Microbiol. Lett. 304:39-46(2010) [PubMed: 20070371]
Protein ref. UniProtKB:   Q60FD2   Q3C1R8 [Mismatch]
DNA ref. GenBank:   AB237774.1 [Different splicing]
mRNA ref. GenBank:   AB191466 [Mismatch]
Protein sequence: TceCIIBA01 (tclip / LiP01)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   361 (343)
PWM (Da):   %s   37389.47 (35525.5)  
PI (pH):   %s   4.23 (4.23) Peptide Signal:   %s   cut: 19 range:19-361
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAFQTLFALA TLATTVLAVP SPLVSCGGGR SVKNAACCAW FPVLDDIQAN LFNGGKCEEE AHEAVRLTFH DAVGFSLAAQ KAGKFGGGGA DGSILAFSDI ETAFIPNFGL EFTTEGFIPF  ALAHGVSFGD FVQFAGAVGA ANCAGGPRLQ FLAGRSNISQ PSPDGLVPDP TDSADKILAR MADIGFSPTE VVHLLASHSI AAQYEVDTDV AGSPFDSTPS VFDTQFFVES LLHGTQFTGS  GQGGEVMSPI PGEFRLQSDF ALSRDPRTAC EWQALVNNQQ AMVNNFEAVM SRLAVIGQIP SELVDCSDVI PTPPLAKVAQ VGSLPPGKSM ADVQVACTNG MPFPSLPTSP GPVQTVAPVL 

Retrieve as FASTA  
Remarks Complete sequence from mRNA. No EST available. Very similar to genomic sequence AB237774 but inconsistancy. VQTVAPVLG with the mRNA data and VQTVAPLG with the DNA => splicing variation for the last very short exon (LG)
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCATTCC AGACCCTCTT CGCTCTTGCT ACTCTCGCCA CCACTGTCCT CGCTGTGCCC TCTCCTCTCG TGAGCTGCGG TGGCGGCCGG TCTGTCAAGA ACGCTGCCTG CTGTGCATGG  TTCCCAGTTT TGGACGACAT TCAGGCGAAT TTGTTCAACG GCGGCAAATG CGAGGAAGAA GCCCATGAGG CCGTTCGCCT CACTTTCCAC GACGCAGTCG GTTTCAGTCT TGCTGCTCAG  AAAGCTGGAA AGTTTGGTGG CGGTGGTGCC GATGGTTCTA TCTTGGCCTT CTCGGACATA GAGACTGCAT TCATTCCAAA CTTTGGCTTG GAATTCACCA CTGAAGGGTT CATCCCCTTC  GCTCTGGCCC ACGGCGTTTC CTTCGGCGAC TTCGTTCAGT TTGCTGGCGC CGTCGGCGCA GCTAACTGTG CCGGAGGTCC TCGTCTTCAG TTCTTGGCTG GCAGATCCAA CATCTCCCAG  CCTTCTCCTG ACGGCCTCGT TCCCGACCCG ACTGACTCCG CCGACAAGAT CCTGGCGCGC ATGGCAGACA TCGGTTTCTC TCCCACTGAG GTCGTTCACC TGCTCGCTTC CCACAGTATT  GCTGCTCAAT ACGAAGTGGA CACGGACGTC GCTGGAAGCC CATTCGACTC CACGCCAAGC GTCTTCGATA CACAGTTCTT CGTCGAGTCT CTGCTCCACG GTACCCAGTT CACTGGTAGC  GGTCAAGGCG GTGAGGTGAT GTCCCCCATC CCGGGCGAGT TCCGTCTTCA GTCCGACTTC GCGCTCTCTC GTGACCCCAG AACCGCCTGT GAATGGCAAG CCCTCGTCAA CAACCAACAG  GCAATGGTCA ACAACTTCGA GGCCGTCATG TCCAGGCTCG CCGTCATTGG TCAGATCCCG TCTGAGCTCG TCGACTGCTC CGATGTCATT CCTACTCCAC CCCTTGCCAA GGTTGCACAG  GTCGGAAGCT TGCCGCCGGG CAAGTCCATG GCTGACGTCC AGGTCGCTTG CACCAACGGC ATGCCTTTCC CAAGCCTGCC GACTTCCCCC GGCCCTGTCC AGACCGTTGC CCCTGTTCTC 
GGGTAA 

Retrieve as FASTA