Entry information : RetCP01_CFN42
Entry ID 2371
Creation 2006-08-24 (Nenad Bakalovic)
Last sequence changes 2016-01-06 (Achraf Jemmat)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-01-06 (Christophe Dunand)
Peroxidase information: RetCP01_CFN42
Name RetCP01_CFN42
Class Catalase peroxidase    [Orthogroup: CP001]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Rhizobiaceae Rhizobium
Organism Rhizobium etli    [TaxId: 29449 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RetCP01_CFN42
start..stop
S start..stop
RleCP01 1276 0 1..726 1..727
SmedCP01 1246 0 1..726 42..767
SmeCP01 1232 0 1..726 1..726
RpCP01_CGA009 1121 0 1..726 1..729
Literature and cross-references RetCP01_CFN42
Literature Del Carmen Vargas,M. et al., Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon, Microbiology 149 (Pt 5), 1165-1176 (2003)
Protein ref. GenBank:   AAL93241.1 UniProtKB:   Q8RMZ6
DNA ref. GenBank:   AF486647.1
Protein sequence: RetCP01_CFN42
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   727
PWM (Da):   %s   79768.23  
PI (pH):   %s   6.71
Sequence
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Send to Peroxiscan
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MDNPTDTAGK CPVAHGNKPR GPSNRDWWPN QLNVQILHHN SGRADPLGKD FDYAEDIQEA RSRRAEKGLH ALMTDSQDWW PADFGHYGGL FIRMAWHSAG TYRITDGRGG AGHGQHRFAP  LNSWPDNANL DKARRLLWPI KQKYGNRISW ADLLILTGNV ALESMGFKTL GFAGGCADVW EPEELYWGPE GTWLGDERYS GERHLANPLG AVQMGLIYVN PEGPNGNPDP VAAARDIRET  LARMAMNDEE TVALIAGGHT FGKTHGAGDP SFIGAEPEGG AIEDQGLGWK SSFGTGVGKD AITAGLEVTW SQTPTKWSNY FFENLFAYEW ELTKSPAGAH QWRAKNAEAS IPDAYEPGKK  HVPTMLTTDL SLRFDPIYEK ISRRFLENPD QFADAFARAW FKLTHRDMGP KVRYFGPELP AEDLIWQDVI PAVDHPFVDD KDIAELKAKV LATGLTVQEL VSTAWASAST FRGSDKRGGA  NGARIRLAPQ KDWEANQPAQ LAKVLGVLEG IQKDFNAAQT GAKKISLADL IVLAGAAGVK KAAAAGGNAV SVPLTPGRMD ASEAQTDAHS FAPLEPRIDG FRNYVNGKRL QFMKPEEMLV  DRAQLLTLTG PEMTVLVGGL RVLKAGNPEH GVFTSRPETL TNDFFVNLLD VGDQWVPAPE RKGLYRPRRK TGAAKWTGTR VDLIFGSHSQ LRAFAEVYGQ ADAKQKFVKD FVAAWNKVMN 
ADRFDLR 

Retrieve as FASTA  
Remarks Complete sequence from genomic (plasmid p42f). Another version of this peroxidase was independently sequenced by a second group, and can be found under the NCBI accession ABC93898 or SwissProt Q2JZT8: it however differs by 34 amino acids!
DNA
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ATGGACAACC CCACTGACAC CGCAGGCAAA TGTCCTGTGG CCCATGGCAA CAAGCCGCGC GGCCCTTCCA ACCGCGACTG GTGGCCGAAC CAGCTGAACG TGCAGATTCT TCATCACAAT  TCCGGGCGCG CCGATCCGCT CGGTAAGGAC TTCGATTATG CCGAAGATAT CCAAGAAGCT CGATCTCGAC GCGCTGAAAA AGGACTTCAC GCGCTGATGA CGGATTCGCA GGACTGGTGG  CCGGCCGACT TCGGTCATTA TGGCGGCCTC TTCATCCGCA TGGCCTGGCA CAGCGCCGGC ACCTATCGCA TCACCGACGG GCGCGGCGGC GCGGGCCATG GTCAGCATCG TTTTGCGCCG  CTGAACAGCT GGCCGGACAA TGCCAACCTT GACAAGGCCC GCCGTCTGCT TTGGCCGATC AAGCAGAAAT ACGGCAACCG CATCTCCTGG GCCGACCTTC TGATCCTCAC CGGCAACGTC  GCGCTCGAGT CCATGGGCTT TAAGACGCTC GGCTTCGCCG GCGGCTGCGC CGACGTCTGG GAGCCGGAAG AGCTCTACTG GGGGCCTGAA GGCACCTGGC TCGGCGACGA GCGCTATAGC  GGCGAACGGC ATCTGGCGAA CCCGCTTGGC GCCGTGCAGA TGGGTCTCAT CTACGTCAAT CCCGAAGGCC CGAATGGCAA TCCTGACCCG GTCGCTGCAG CGCGCGACAT TCGCGAAACC  TTGGCCCGCA TGGCGATGAA CGACGAGGAA ACCGTGGCAC TGATCGCCGG CGGTCATACC TTCGGCAAGA CGCATGGCGC CGGCGATCCG TCCTTCATCG GCGCCGAACC GGAAGGCGGC  GCGATCGAGG ACCAGGGCCT CGGCTGGAAG AGCTCTTTCG GCACCGGCGT CGGCAAGGAC GCCATTACCG CCGGCCTCGA GGTTACCTGG TCGCAGACGC CGACCAAGTG GAGCAACTAC  TTCTTCGAAA ACCTCTTTGC TTACGAGTGG GAGCTGACGA AGAGCCCGGC CGGGGCGCAT CAGTGGCGGG CGAAGAACGC CGAAGCCTCA ATTCCGGATG CCTATGAGCC GGGGAAGAAG  CATGTCCCGA CGATGCTGAC CACGGATCTT TCGCTCCGCT TCGATCCGAT CTACGAAAAA ATCTCGCGCC GCTTCCTGGA GAATCCGGAT CAGTTCGCCG ACGCTTTCGC CCGCGCCTGG  TTCAAGCTGA CCCACCGCGA CATGGGACCG AAAGTGCGTT ACTTCGGCCC CGAACTTCCG GCCGAAGACC TGATCTGGCA GGACGTGATC CCCGCCGTCG ACCATCCCTT CGTCGACGAC  AAGGACATTG CCGAACTCAA GGCAAAGGTT CTCGCCACCG GCCTCACCGT GCAGGAATTG GTTTCGACCG CCTGGGCTTC GGCCTCGACC TTCCGCGGCT CCGACAAGCG CGGCGGCGCC  AATGGCGCGC GCATCCGCCT TGCTCCGCAG AAGGATTGGG AAGCCAACCA GCCGGCCCAG CTCGCCAAGG TGCTCGGCGT TCTCGAAGGG ATCCAGAAGG ACTTCAACGC CGCCCAGACG  GGGGCTAAGA AGATCTCGCT CGCCGACCTG ATCGTTCTCG CCGGTGCCGC CGGTGTCAAG AAGGCGGCGG CAGCCGGCGG CAACGCCGTC AGCGTGCCCC TCACGCCGGG CCGCATGGAC  GCGTCCGAAG CCCAGACCGA CGCGCATTCA TTCGCGCCGC TCGAGCCGCG CATCGACGGC TTCCGCAACT ATGTGAACGG CAAGCGCCTG CAGTTCATGA AGCCGGAAGA AATGCTCGTC  GACCGCGCCC AGCTCTTGAC GCTGACCGGA CCCGAGATGA CCGTTCTCGT CGGCGGCCTG CGCGTGCTGA AGGCTGGCAA CCCCGAGCAT GGCGTGTTCA CCTCGCGTCC AGAAACGCTG  ACGAACGACT TTTTTGTCAA CCTGCTCGAC GTGGGCGACC AATGGGTTCC GGCCCCGGAA AGGAAGGGCC TTTATAGGCC GCGACGCAAG ACGGGTGCCG CCAAATGGAC CGGCACCCGC  GTCGACCTGA TCTTCGGCTC GCACTCGCAG CTGCGCGCCT TCGCCGAAGT CTACGGCCAG GCCGACGCCA AGCAGAAGTT CGTCAAGGAC TTCGTCGCCG CCTGGAACAA GGTCATGAAC 
GCCGACCGCT TCGACCTCCG T 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGACAACC CCACTGACAC CGCAGGCAAA TGTCCTGTGG CCCATGGCAA CAAGCCGCGC GGCCCTTCCA ACCGCGACTG GTGGCCGAAC CAGCTGAACG TGCAGATTCT TCATCACAAT  TCCGGGCGCG CCGATCCGCT CGGTAAGGAC TTCGATTATG CCGAAGATAT CCAAGAAGCT CGATCTCGAC GCGCTGAAAA AGGACTTCAC GCGCTGATGA CGGATTCGCA GGACTGGTGG  CCGGCCGACT TCGGTCATTA TGGCGGCCTC TTCATCCGCA TGGCCTGGCA CAGCGCCGGC ACCTATCGCA TCACCGACGG GCGCGGCGGC GCGGGCCATG GTCAGCATCG TTTTGCGCCG  CTGAACAGCT GGCCGGACAA TGCCAACCTT GACAAGGCCC GCCGTCTGCT TTGGCCGATC AAGCAGAAAT ACGGCAACCG CATCTCCTGG GCCGACCTTC TGATCCTCAC CGGCAACGTC  GCGCTCGAGT CCATGGGCTT TAAGACGCTC GGCTTCGCCG GCGGCTGCGC CGACGTCTGG GAGCCGGAAG AGCTCTACTG GGGGCCTGAA GGCACCTGGC TCGGCGACGA GCGCTATAGC  GGCGAACGGC ATCTGGCGAA CCCGCTTGGC GCCGTGCAGA TGGGTCTCAT CTACGTCAAT CCCGAAGGCC CGAATGGCAA TCCTGACCCG GTCGCTGCAG CGCGCGACAT TCGCGAAACC  TTGGCCCGCA TGGCGATGAA CGACGAGGAA ACCGTGGCAC TGATCGCCGG CGGTCATACC TTCGGCAAGA CGCATGGCGC CGGCGATCCG TCCTTCATCG GCGCCGAACC GGAAGGCGGC  GCGATCGAGG ACCAGGGCCT CGGCTGGAAG AGCTCTTTCG GCACCGGCGT CGGCAAGGAC GCCATTACCG CCGGCCTCGA GGTTACCTGG TCGCAGACGC CGACCAAGTG GAGCAACTAC  TTCTTCGAAA ACCTCTTTGC TTACGAGTGG GAGCTGACGA AGAGCCCGGC CGGGGCGCAT CAGTGGCGGG CGAAGAACGC CGAAGCCTCA ATTCCGGATG CCTATGAGCC GGGGAAGAAG  CATGTCCCGA CGATGCTGAC CACGGATCTT TCGCTCCGCT TCGATCCGAT CTACGAAAAA ATCTCGCGCC GCTTCCTGGA GAATCCGGAT CAGTTCGCCG ACGCTTTCGC CCGCGCCTGG  TTCAAGCTGA CCCACCGCGA CATGGGACCG AAAGTGCGTT ACTTCGGCCC CGAACTTCCG GCCGAAGACC TGATCTGGCA GGACGTGATC CCCGCCGTCG ACCATCCCTT CGTCGACGAC  AAGGACATTG CCGAACTCAA GGCAAAGGTT CTCGCCACCG GCCTCACCGT GCAGGAATTG GTTTCGACCG CCTGGGCTTC GGCCTCGACC TTCCGCGGCT CCGACAAGCG CGGCGGCGCC  AATGGCGCGC GCATCCGCCT TGCTCCGCAG AAGGATTGGG AAGCCAACCA GCCGGCCCAG CTCGCCAAGG TGCTCGGCGT TCTCGAAGGG ATCCAGAAGG ACTTCAACGC CGCCCAGACG  GGGGCTAAGA AGATCTCGCT CGCCGACCTG ATCGTTCTCG CCGGTGCCGC CGGTGTCAAG AAGGCGGCGG CAGCCGGCGG CAACGCCGTC AGCGTGCCCC TCACGCCGGG CCGCATGGAC  GCGTCCGAAG CCCAGACCGA CGCGCATTCA TTCGCGCCGC TCGAGCCGCG CATCGACGGC TTCCGCAACT ATGTGAACGG CAAGCGCCTG CAGTTCATGA AGCCGGAAGA AATGCTCGTC  GACCGCGCCC AGCTCTTGAC GCTGACCGGA CCCGAGATGA CCGTTCTCGT CGGCGGCCTG CGCGTGCTGA AGGCTGGCAA CCCCGAGCAT GGCGTGTTCA CCTCGCGTCC AGAAACGCTG  ACGAACGACT TTTTTGTCAA CCTGCTCGAC GTGGGCGACC AATGGGTTCC GGCCCCGGAA AGGAAGGGCC TTTATAGGCC GCGACGCAAG ACGGGTGCCG CCAAATGGAC CGGCACCCGC  GTCGACCTGA TCTTCGGCTC GCACTCGCAG CTGCGCGCCT TCGCCGAAGT CTACGGCCAG GCCGACGCCA AGCAGAAGTT CGTCAAGGAC TTCGTCGCCG CCTGGAACAA GGTCATGAAC 
GCCGACCGCT TCGACCTCCG T 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGACAACC CCACTGACAC CGCAGGCAAA TGTCCTGTGG CCCATGGCAA CAAGCCGCGC GGCCCTTCCA ACCGCGACTG GTGGCCGAAC CAGCTGAACG TGCAGATTCT TCATCACAAT  TCCGGGCGCG CCGATCCGCT CGGTAAGGAC TTCGATTATG CCGAAGATAT CCAAGAAGCT CGATCTCGAC GCGCTGAAAA AGGACTTCAC GCGCTGATGA CGGATTCGCA GGACTGGTGG  CCGGCCGACT TCGGTCATTA TGGCGGCCTC TTCATCCGCA TGGCCTGGCA CAGCGCCGGC ACCTATCGCA TCACCGACGG GCGCGGCGGC GCGGGCCATG GTCAGCATCG TTTTGCGCCG  CTGAACAGCT GGCCGGACAA TGCCAACCTT GACAAGGCCC GCCGTCTGCT TTGGCCGATC AAGCAGAAAT ACGGCAACCG CATCTCCTGG GCCGACCTTC TGATCCTCAC CGGCAACGTC  GCGCTCGAGT CCATGGGCTT TAAGACGCTC GGCTTCGCCG GCGGCTGCGC CGACGTCTGG GAGCCGGAAG AGCTCTACTG GGGGCCTGAA GGCACCTGGC TCGGCGACGA GCGCTATAGC  GGCGAACGGC ATCTGGCGAA CCCGCTTGGC GCCGTGCAGA TGGGTCTCAT CTACGTCAAT CCCGAAGGCC CGAATGGCAA TCCTGACCCG GTCGCTGCAG CGCGCGACAT TCGCGAAACC  TTGGCCCGCA TGGCGATGAA CGACGAGGAA ACCGTGGCAC TGATCGCCGG CGGTCATACC TTCGGCAAGA CGCATGGCGC CGGCGATCCG TCCTTCATCG GCGCCGAACC GGAAGGCGGC  GCGATCGAGG ACCAGGGCCT CGGCTGGAAG AGCTCTTTCG GCACCGGCGT CGGCAAGGAC GCCATTACCG CCGGCCTCGA GGTTACCTGG TCGCAGACGC CGACCAAGTG GAGCAACTAC  TTCTTCGAAA ACCTCTTTGC TTACGAGTGG GAGCTGACGA AGAGCCCGGC CGGGGCGCAT CAGTGGCGGG CGAAGAACGC CGAAGCCTCA ATTCCGGATG CCTATGAGCC GGGGAAGAAG  CATGTCCCGA CGATGCTGAC CACGGATCTT TCGCTCCGCT TCGATCCGAT CTACGAAAAA ATCTCGCGCC GCTTCCTGGA GAATCCGGAT CAGTTCGCCG ACGCTTTCGC CCGCGCCTGG  TTCAAGCTGA CCCACCGCGA CATGGGACCG AAAGTGCGTT ACTTCGGCCC CGAACTTCCG GCCGAAGACC TGATCTGGCA GGACGTGATC CCCGCCGTCG ACCATCCCTT CGTCGACGAC  AAGGACATTG CCGAACTCAA GGCAAAGGTT CTCGCCACCG GCCTCACCGT GCAGGAATTG GTTTCGACCG CCTGGGCTTC GGCCTCGACC TTCCGCGGCT CCGACAAGCG CGGCGGCGCC  AATGGCGCGC GCATCCGCCT TGCTCCGCAG AAGGATTGGG AAGCCAACCA GCCGGCCCAG CTCGCCAAGG TGCTCGGCGT TCTCGAAGGG ATCCAGAAGG ACTTCAACGC CGCCCAGACG  GGGGCTAAGA AGATCTCGCT CGCCGACCTG ATCGTTCTCG CCGGTGCCGC CGGTGTCAAG AAGGCGGCGG CAGCCGGCGG CAACGCCGTC AGCGTGCCCC TCACGCCGGG CCGCATGGAC  GCGTCCGAAG CCCAGACCGA CGCGCATTCA TTCGCGCCGC TCGAGCCGCG CATCGACGGC TTCCGCAACT ATGTGAACGG CAAGCGCCTG CAGTTCATGA AGCCGGAAGA AATGCTCGTC  GACCGCGCCC AGCTCTTGAC GCTGACCGGA CCCGAGATGA CCGTTCTCGT CGGCGGCCTG CGCGTGCTGA AGGCTGGCAA CCCCGAGCAT GGCGTGTTCA CCTCGCGTCC AGAAACGCTG  ACGAACGACT TTTTTGTCAA CCTGCTCGAC GTGGGCGACC AATGGGTTCC GGCCCCGGAA AGGAAGGGCC TTTATAGGCC GCGACGCAAG ACGGGTGCCG CCAAATGGAC CGGCACCCGC  GTCGACCTGA TCTTCGGCTC GCACTCGCAG CTGCGCGCCT TCGCCGAAGT CTACGGCCAG GCCGACGCCA AGCAGAAGTT CGTCAAGGAC TTCGTCGCCG CCTGGAACAA GGTCATGAAC 
GCCGACCGCT TCGACCTCCG T 

Retrieve as FASTA