Entry information : PtrAPx-CcP01
Entry ID 2540
Creation 2010-05-06 (Christophe Dunand)
Last sequence changes 2011-03-11 (Marcel Zamocky)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-08-10 (Christophe Dunand)
Peroxidase information: PtrAPx-CcP01
Name PtrAPx-CcP01
Class Hybrid Ascorbate-Cytochrome C peroxidase    [Orthogroup: APx-CcP001]
Taxonomy Eukaryota Bacillariophyta Bacillariophyceae Phaeodactylaceae Phaeodactylum
Organism Phaeodactylum tricornutum    [TaxId: 2850 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtrAPx-CcP01
start..stop
S start..stop
RspCcP05 166 2e-49 117..271 1..155
TthCcP02 114 9e-29 89..312 31..242
AnigCcP01 98 3e-22 80..415 83..409
ArubCcP01 94 4e-22 110..323 4..212
Literature and cross-references PtrAPx-CcP01
Literature Reference #1 Scala,S. et al., Genome properties of the diatom Phaeodactylum tricornutum, Plant Physiol. 129 (3), 993-1002 (2002)
Reference #2 Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V. (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456:239-244.
Protein ref. UniProtKB:   B7S401
DNA ref. GenBank:   DS999283.1 (30620..28866)
EST ref. GenBank:   CT907519.1 [5' end]   CU706299.1 [3' end]
Cluster/Prediction ref. UniGene:   Ptc.331
Protein sequence: PtrAPx-CcP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   520 (488)
PWM (Da):   %s   56770.41 (53114.5) Transmb domain:   %s   i13-35o470-492i (o438-460i)
PI (pH):   %s   4.41 (4.42) Peptide Signal:   %s   cut: 33 range:33-520
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MDLTIIDEFR MMILPSVHFV FALLWVAVPL SAQPLSAQDP VLSPSKGTDV LLPSEEAAWW ATLSIQEKGK LSQLFHAPWF VTLQEKEKIA YCYVAQKVYD LLNSGADSNP DDSYRGFAPL  LLRTSFHSSG SYHHGSGSGG SNGGTIFNQA ELDDDMNGCI QTATDEINSR LNNSAIVSLA DAVIIAGVVA LDSMGFPRMD LIRVQGGRVD LEKLAYTQSM ASPDNDPMMH FVTMYNLTVS  ELVAVIGGGH NFGSAHGMCS GYQGQWTTDP LSWSDPETGV PEFFVDLLKD DWLWRKVCTY KNGTVSYMSM EDPFSSDIPA VVEDTTPPST CKTELSEDPL NCEAQAMRGC NFADGVYNTS  DSPCDVKLLK MRLRSDFFLK ANPMTRPHAE AFATDPDLLA QEFGVAYRKL THNGLDRCGL SGRGCDGNTK CITYTDTVTD RYLSSSCVSD VGYNYAADED SDYGSWSLDH GASIAVLFLL 
AITSILSIFL TFKAVRKYAK APPDVGKEYT EPSSGDREIS 

Retrieve as FASTA  
Remarks Complete sequence from 39 ESTs. Strain="CCAP 1055/1".
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CCAGGTTGTT CTCATGGACC TCACAATAAT TGATGAATTC AGAATGATGA TTCTCCCTTC CGTGCATTTC GTTTTTGCCC TACTTTGGGT CGCTGTACCC TTGTCGGCTC AGCCCTTGTC  TGCTCAGGAT CCTGTTCTGA GCCCGAGCAA AGGAACCGAT GTCTTGTTGC CTTCGGAAGA AGCAGCTTGG TGGGCTACTC TCTCGATACA GGAAAAGGGA AAGCTCAGTC AGCTCTTTCA  CGCTCCCTGG TTCGTCACGC TTCAGGAAAA GGAAAAAATT GCTTACTGTT ACGTTGCTCA GAAAGTATAT GATCTTCTGA ACAGCGGCGC TGACTCCAAT CCCGACGACA GTTATCGTGG  TTTCGCTCCA CTCCTTCTCC GTACGTCCTT CCACTCCAGT GGGTCCTATC ACCACGGTTC CGGTTCTGGC GGGTCCAATG GAGGAACGAT CTTCAACCAG GCAGAGCTCG ACGACGACAT  GAATGGTTGT ATCCAGACTG CTACAGACGA GATCAACAGT CGACTTAACA ATTCCGCTAT TGTTTCCCTT GCCGACGCTG TCATTATTGC CGGAGTTGTC GCGCTTGATT CTATGGGCTT  TCCTCGCATG GACCTCATTC GGGTCCAGGG CGGCCGTGTG GACCTGGAGA AGTTGGCCTA TACCCAATCA ATGGCATCGC CTGATAACGA TCCAATGATG CACTTTGTGA CCATGTATAA  CCTCACTGTC TCCGAACTGG TTGCCGTTAT TGGGGGTGGA CACAACTTTG GCTCTGCCCA TGGGATGTGC TCTGGATATC AAGGACAATG GACAACCGAT CCTCTCTCCT GGTCCGATCC  AGAAACAGGA GTGCCTGAAT TCTTCGTCGA CTTGCTCAAG GATGACTGGC TCTGGCGTAA AGTATGCACT TTACAAGAAC GGTACTGTAT CCTATATGTC CATGGAAGAC CCCCTTTTTC  AGTGACATTC TCGCTGTTGT GGAAGATACT ACACCCCCCC TCAACCGGAA AAACCGAATT GCCCGAAGAA CCCCCTTAAT TTGCAAGCCC AGGCTAACCG GGGTTGTTAA TTATTGGAAA  GGGGGCTAAA AAAACCTCCG GAATACCCTA GCCAACTAAA CCTGGAGAAA GATACGCGTA AGGCTCGAAA TTCGTCATAA AACTAATACA AGTACATGCC CGGGAAGCTA AGGAATTTGA  CAGCGAACCC AAACCACAGG CGCCAAGAAT ATGAGTAGGT CTTACCGTAT AATTTACAAC CCAAGTGGAG TGGGAAGCCC GGCGGGATTG AGGAAGGGCC GTTGGTGGGG GGTGGGGAAA  ACCTGCAGGG GGAAATTCTT ATAACTATAA GAAACTGCGT AACAAAGCTC CGAAAGAGTG GGCCGATGCG ACAGCCCGAG GAACAATAAA ACAAGGTGCG GGCGTATAAA AACCATAGTT 
GCACCAGGAA TAAATCAA 

Retrieve as FASTA