Entry information : TpsAPx-R
Entry ID 2559
Creation 2005-12-28 (Nenad Bakalovic)
Last sequence changes 2011-06-14 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-06-14 (Christophe Dunand)
Peroxidase information: TpsAPx-R
Name TpsAPx-R
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira
Organism Thalassiosira pseudonana    [TaxId: 35128 ]
Cellular localisation Peroxisomal
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TpsAPx-R
start..stop
S start..stop
PtrAPx-R 318 6e-109 5..297 39..327
MeAPx09 123 8e-34 35..292 34..244
GmAPx06 119 4e-32 35..290 34..243
PpeAPx01 119 5e-32 3..294 7..247
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 624..1517 894  
complement(join(624..1517))


exon

Literature and cross-references TpsAPx-R
Literature Madera, M. et al., The SUPERFAMILY database in 2004: additions and improvements, Nucl. Acids Res., 32, D235-D239.
DNA ref. JGI genome:   scaffold_506 (1517..624)
mRNA ref. JGI transcript:   107698
Protein sequence: TpsAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   297
PWM (Da):   %s   32831.82  
PI (pH):   %s   6.79
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MNDKEREAQL QLASCLVRKS TSDYLHDDPT LAGPFLRLAF HDAATREDSS STSFAAFSGG PNGSIKYELD WSENRGLSRP LKDIEQIHAE IVRNLNISLA DTIALAGAQA VQAARGPTIS  IRLGRRDATK ADERNRRNNL QSDTTRSLVD TTLPSAGLDS EGLRLYFGAL GLSDKEFVAL CGAHDLGRHV TLLDMPKACL KNLTRECLEN APMLMPFVAE EPDTFSNSYF LKLLKWNDRR 
VALGEVAFIP TDVDLVVDEG LRRYVKHFAR DKAAFYSTFA TAYRKLVEPG TTSVRRY 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAATGACA AAGAACGAGA AGCCCAGCTT CAATTGGCAT CCTGTCTTGT AAGAAAGTCA ACGTCTGATT ATCTACACGA TGATCCTACG CTGGCTGGTC CGTTTCTTCG GCTTGCCTTT  CATGATGCCG CGACGAGAGA GGATTCCAGC AGTACGTCAT TTGCAGCGTT CAGCGGAGGG CCAAACGGAT CCATCAAATA CGAGTTGGAT TGGAGCGAGA ATAGAGGATT ATCTCGCCCT  CTAAAAGATA TTGAGCAAAT ACACGCAGAG ATTGTTAGGA ATTTGAACAT ATCGCTAGCT GATACCATTG CATTAGCGGG GGCTCAAGCA GTTCAAGCTG CTCGAGGTCC TACAATTTCT  ATTCGGTTGG GAAGGAGAGA TGCCACCAAG GCAGATGAAA GAAATAGAAG AAACAATCTA CAAAGCGATA CAACTAGATC GCTGGTGGAT ACAACTCTTC CTTCTGCCGG GTTGGATAGT  GAAGGATTAC GACTCTACTT TGGAGCACTG GGATTGTCAG ACAAAGAGTT CGTTGCATTG TGTGGAGCAC ATGATTTAGG AAGACACGTT ACATTATTGG ATATGCCAAA AGCTTGTCTG  AAGAATCTCA CAAGAGAGTG CTTAGAGAAT GCTCCTATGT TAATGCCGTT TGTCGCTGAA GAGCCGGATA CTTTCTCAAA CTCGTACTTC TTGAAGCTGC TAAAGTGGAA CGATAGAAGA  GTTGCTCTCG GAGAAGTTGC ATTTATACCG ACAGATGTAG ACTTGGTTGT CGACGAGGGA TTGAGGAGGT ATGTGAAGCA TTTTGCACGC GATAAGGCGG CATTCTATTC TACTTTCGCT 
ACAGCATACA GAAAACTCGT TGAACCAGGG ACTACGAGTG TACGAAGGTA CTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAATGACA AAGAACGAGA AGCCCAGCTT CAATTGGCAT CCTGTCTTGT AAGAAAGTCA ACGTCTGATT ATCTACACGA TGATCCTACG CTGGCTGGTC CGTTTCTTCG GCTTGCCTTT  CATGATGCCG CGACGAGAGA GGATTCCAGC AGTACGTCAT TTGCAGCGTT CAGCGGAGGG CCAAACGGAT CCATCAAATA CGAGTTGGAT TGGAGCGAGA ATAGAGGATT ATCTCGCCCT  CTAAAAGATA TTGAGCAAAT ACACGCAGAG ATTGTTAGGA ATTTGAACAT ATCGCTAGCT GATACCATTG CATTAGCGGG GGCTCAAGCA GTTCAAGCTG CTCGAGGTCC TACAATTTCT  ATTCGGTTGG GAAGGAGAGA TGCCACCAAG GCAGATGAAA GAAATAGAAG AAACAATCTA CAAAGCGATA CAACTAGATC GCTGGTGGAT ACAACTCTTC CTTCTGCCGG GTTGGATAGT  GAAGGATTAC GACTCTACTT TGGAGCACTG GGATTGTCAG ACAAAGAGTT CGTTGCATTG TGTGGAGCAC ATGATTTAGG AAGACACGTT ACATTATTGG ATATGCCAAA AGCTTGTCTG  AAGAATCTCA CAAGAGAGTG CTTAGAGAAT GCTCCTATGT TAATGCCGTT TGTCGCTGAA GAGCCGGATA CTTTCTCAAA CTCGTACTTC TTGAAGCTGC TAAAGTGGAA CGATAGAAGA  GTTGCTCTCG GAGAAGTTGC ATTTATACCG ACAGATGTAG ACTTGGTTGT CGACGAGGGA TTGAGGAGGT ATGTGAAGCA TTTTGCACGC GATAAGGCGG CATTCTATTC TACTTTCGCT 
ACAGCATACA GAAAACTCGT TGAACCAGGG ACTACGAGTG TACGAAGGTA CTGA 

Retrieve as FASTA