Entry information : TpsAPx04
Entry ID 2560
Creation 2008-08-14 (Christophe Dunand)
Last sequence changes 2008-08-14 (Christophe Dunand)
Sequence status complete
Reviewer Michele Oliva
Last annotation changes 2010-08-31 (Christophe Dunand)
Peroxidase information: TpsAPx04
Name TpsAPx04
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira
Organism Thalassiosira pseudonana    [TaxId: 35128 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TpsAPx04
start..stop
S start..stop
OtriAPx01 69 0.0000000000001 12..213 21..184
SlemAPx01 68 0.0000000000002 12..287 21..257
ScucAPx04 63 0.00000000001 17..212 27..182
MbrAPx02 62 0.00000000001 16..266 29..238
Literature and cross-references TpsAPx04
Literature Madera, M. et al., The SUPERFAMILY database in 2004: additions and improvements, Nucl. Acids Res., 32, D235-D239.
DNA ref. JGI genome:   scaffold_4 (644529..762949)
mRNA ref. JGI transcript:   105991
EST ref. GenBank:   FC529512.1 [3' end]   FC481580.1 [Fragment]
Protein sequence: TpsAPx04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   292
PWM (Da):   %s   32002.35  
PI (pH):   %s   4.56
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MDFEVSSAHK LLAQWTRAAF HDAGTFNQIT GEGGANGCLL TDPLMRDEPE NDFLDDALNT LQDIKNLWHA HADTCINVSS ADMLQFAIFF AVNRQKGTPG LDAAKRATMI SDFTWGRPDE  PNCDTMWTLN LPDFNHPATN GPIPTRCTAA GGEIKNKMMD RNGFTDEEAT ALIGAHTIGL IRNTFGPGMA GAWVTNGEDS ATFNGPVFDN AYHDFLSNTI VENTAPAFAG NYAPYVHNTA 
YKRQCFTLLV VQQDSLLVEQ QKLEELKMLE ESTKMLERKA ANQASHQDSI SV 

Retrieve as FASTA  
Remarks Is it an ascorbate peroxidase??? HMM prediction (used) and Softberry prediction are not the same.