Entry information : PtrAPx02
Entry ID 2573
Creation 2008-09-02 (Christophe Dunand)
Last sequence changes 2008-09-02 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-03-17 (Christophe Dunand)
Peroxidase information: PtrAPx02
Name PtrAPx02
Class Ascorbate peroxidase     [Orthogroup: APx002]*
Taxonomy Eukaryota Bacillariophyta Bacillariophyceae Phaeodactylaceae Phaeodactylum
Organism Phaeodactylum tricornutum    [TaxId: 2850 ]
Cellular localisation Stromal
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtrAPx02
start..stop
S start..stop
PtrAPx01 390 5e-138 1..243 30..272
TpsAPx02 355 4e-124 3..243 30..271
TocAPx01 339 3e-118 2..242 8..250
GtAPx02 339 2e-117 10..245 68..303
Literature and cross-references PtrAPx02
Literature Scala,S. et al., Genome properties of the diatom Phaeodactylum tricornutum, Plant Physiol. 129 (3), 993-1002 (2002)
DNA ref. JGI genome:   chr_13 (519093..519710)
mRNA ref. GenBank:   XM_002181706.1 [Different splicing]
Cluster/Prediction ref. UniGene:   Ptc.3293
Protein sequence: PtrAPx02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   268
PWM (Da):   %s   28671.14  
PI (pH):   %s   7.06
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ISNTMPVSKE ALSSAKEMID ALILEKNCGP IMVRVGWHDS GTFDKNVSGA WPSAGGAVGS IRFDPEITHG ANAGLINAIK LLEPIKEANP DVSYADIFQM ASARSIELAG GPRIDMKYGR  IDSNGPENCS KEGNLPDAEP GSNGMYGGPG GSASTEDSTA AGHLRKVFYR MGLNDEEIVA LSGAHTFGRA YKNRSGLGAE KTKFTDGSKQ MRADGIEAKY TPGGSSWTEN FLFFHNSYYK 
VIPRRVPPIR NYSSLSTEQG KFLRDNGI 

Retrieve as FASTA  
Remarks Partial sequence from genomic (chromo 13), 5 ESTs (6 included in the Unigene and many discrepancies for the 3'end), 5' is missing.